MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.6 nTPM
HPA Brain:11.9 nTPM
GTEx:7.6 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:0.5 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.7
1830 Male, age 51, unknown 13.2
1833 Male, age 53, unknown 12.6
2411 Female, age 72, unknown 12.1
2219 Male, age 76, both hemispheres 10.5
1870 Female, age 42, unknown 10.3
2019 Male, age 18, unknown 9.8
2828 Female, age 72, unknown 9.7
1827 Male, age 72, unknown 9.6
2586 Male, age 75, left hemisphere 9.6
2666 Male, age 74, left hemisphere 9.4
Dorsal raphe nucleus
nTPM: 10.2
2750 Male, age 76, both hemispheres 11.7
2016 Female, age 72, unknown 10.9
2047 Male, age 72, unknown 9.9
1828 Male, age 53, unknown 9.6
2298 Female, age 72, unknown 9.0
Inferior colliculus
nTPM: 10.7
1890 Male, age 53, unknown 11.1
2849 Male, age 72, unknown 11.0
1848 Female, age 42, unknown 10.5
2097 Female, age 72, unknown 10.4
Median raphe nucleus
nTPM: 11.6
2220 Male, age 76, midline 11.6
Periaquaductal grey, anterior
nTPM: 10.0
1947 Male, age 18, unknown 11.3
2502 Female, age 75, unknown 10.7
1795 Male, age 51, unknown 7.9
Periaquaductal grey, dorsal
nTPM: 10.4
1831 Male, age 72, unknown 11.1
2464 Female, age 72, unknown 10.7
2850 Male, age 76, both hemispheres 10.5
1840 Male, age 53, unknown 9.3
Periaquaductal grey, lateral
nTPM: 9.9
2053 Male, age 18, unknown 10.3
2272 Male, age 74, both hemispheres 9.9
2140 Male, age 76, both hemispheres 9.6
Pretectal area
nTPM: 9.6
2407 Male, age 75, both hemispheres 12.4
2667 Female, age 75, unknown 12.0
2825 Male, age 18, unknown 11.2
2316 Male, age 76, right hemisphere 11.1
1815 Male, age 53, unknown 10.0
2224 Female, age 72, unknown 9.3
2273 Male, age 74, both hemispheres 8.9
2007 Male, age 72, unknown 7.9
1817 Female, age 42, unknown 7.8
1816 Male, age 51, unknown 7.7
1944 Female, age 72, unknown 7.5
Red nucleus
nTPM: 11.9
1904 Male, age 53, unknown 13.6
1865 Male, age 51, unknown 13.3
2588 Male, age 74, left hemisphere 13.2
2584 Male, age 75, left hemisphere 13.0
2503 Female, age 72, unknown 12.8
1821 Female, age 72, unknown 12.2
2227 Male, age 72, unknown 12.2
2823 Male, age 76, right hemisphere 12.1
2769 Male, age 72, unknown 11.9
1954 Female, age 42, unknown 11.4
2785 Male, age 18, unknown 8.6
2725 Female, age 75, unknown 8.1
Substantia nigra
nTPM: 10.6
2590 Female, age 75, unknown 12.3
2583 Male, age 75, right hemisphere 11.9
2699 Male, age 18, unknown 11.8
2241 Male, age 72, unknown 11.6
1851 Male, age 51, unknown 10.9
2409 Female, age 72, unknown 10.2
1941 Male, age 53, unknown 9.9
1916 Female, age 42, unknown 9.8
1889 Female, age 72, unknown 9.5
2665 Male, age 74, both hemispheres 7.9
Superior colliculus
nTPM: 10.1
1895 Male, age 76, right hemisphere 13.2
1913 Female, age 42, unknown 12.7
1995 Male, age 72, unknown 10.5
2664 Male, age 75, both hemispheres 10.1
2587 Male, age 74, left hemisphere 9.5
1796 Male, age 53, unknown 9.4
2261 Male, age 18, unknown 9.3
1839 Male, age 51, unknown 9.2
2668 Female, age 75, unknown 8.9
2087 Female, age 72, unknown 8.2
Ventral tegmental area
nTPM: 11.8
1942 Male, age 51, unknown 13.3
1915 Female, age 42, unknown 12.1
2223 Female, age 72, unknown 12.1
2218 Male, age 76, both hemispheres 11.6
2410 Female, age 72, unknown 11.2
2021 Male, age 53, unknown 10.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.6
Samples: 183

Max nTPM: 16.1
Min nTPM: 3.8
Std nTPM: 2.0
Median nTPM: 7.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 16.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 14.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 13.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 13.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 13.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 12.7
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 11.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 11.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 11.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 11.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.6
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 1.2
Sample C Male 1.1
Sample D Male 3.4
Midbrain
nTPM: 1.2
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 1.8
Sample C Male 0.9
Sample D Male 1.5
Periaqueductal gray
nTPM: 1.6
Samples: 3

Max nTPM: 2.3
Min nTPM: 1.0
Sample B Female 2.3
Sample C Male 1.0
Sample D Male 1.6
Superior colliculi
nTPM: 1.1
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 1.6
Sample D Male 1.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.1
Sample A Male 0.6
Sample B Male 0.7
Sample C Female 0.1
Sample D Female 0.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68301252 Antisense, RP_041129_02_H08, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo