A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.1
nTPM
Monaco:
17.7
nTPM
Schmiedel:
31.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.1
HPA sample
nTPM
Memory B-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.5
Min nTPM: 0.0
P10809_1017
0.1
P10809_1025
0.0
P10809_1044
0.0
P10809_1063
0.0
P10809_1092
0.0
P10809_1105
0.5
Naive B-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1011
0.2
P10809_1029
0.2
P10809_1048
0.0
P10809_1067
0.0
P10809_1091
0.2
P10809_1104
0.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 4.8
Samples: 4
Max nTPM: 7.2
Min nTPM: 2.4
RHH5310_R3677
4.5
RHH5218_R3590
2.4
RHH5247_R3619
7.2
RHH5276_R3648
4.9
Naive B-cell nTPM: 4.4
Samples: 4
Max nTPM: 6.0
Min nTPM: 3.2
RHH5308_R3675
3.4
RHH5216_R3588
3.2
RHH5245_R3617
5.0
RHH5274_R3646
6.0
Non-switched memory B-cell nTPM: 4.6
Samples: 4
Max nTPM: 6.0
Min nTPM: 2.2
RHH5309_R3676
2.2
RHH5217_R3589
6.0
RHH5246_R3618
4.1
RHH5275_R3647
6.0
Plasmablast nTPM: 17.7
Samples: 4
Max nTPM: 19.8
Min nTPM: 12.7
RHH5312_R3679
19.8
RHH5220_R3592
12.7
RHH5249_R3621
19.3
RHH5278_R3650
18.9
Switched memory B-cell nTPM: 5.1
Samples: 4
Max nTPM: 7.3
Min nTPM: 3.2
RHH5311_R3678
3.2
RHH5219_R3591
7.3
RHH5248_R3620
6.5
RHH5277_R3649
3.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.9
Schmiedel sample id
TPM
Naive B-cell TPM: 31.9
Samples: 91
Max TPM: 43.0
Min TPM: 19.6
B_CELL_NAIVE_1
43.0
B_CELL_NAIVE_2
42.7
B_CELL_NAIVE_3
42.0
B_CELL_NAIVE_4
41.1
B_CELL_NAIVE_5
41.0
B_CELL_NAIVE_6
39.9
B_CELL_NAIVE_7
39.8
B_CELL_NAIVE_8
39.3
B_CELL_NAIVE_9
39.2
B_CELL_NAIVE_10
37.9
B_CELL_NAIVE_11
37.5
B_CELL_NAIVE_12
37.1
B_CELL_NAIVE_13
36.8
B_CELL_NAIVE_14
36.6
B_CELL_NAIVE_15
36.5
B_CELL_NAIVE_16
36.3
B_CELL_NAIVE_17
36.2
B_CELL_NAIVE_18
36.1
B_CELL_NAIVE_19
36.0
B_CELL_NAIVE_20
35.9
B_CELL_NAIVE_21
35.9
B_CELL_NAIVE_22
35.7
B_CELL_NAIVE_23
35.7
B_CELL_NAIVE_24
35.4
B_CELL_NAIVE_25
35.3
B_CELL_NAIVE_26
35.3
B_CELL_NAIVE_27
35.1
B_CELL_NAIVE_28
34.8
B_CELL_NAIVE_29
34.2
B_CELL_NAIVE_30
34.2
B_CELL_NAIVE_31
34.1
B_CELL_NAIVE_32
33.7
B_CELL_NAIVE_33
33.7
B_CELL_NAIVE_34
33.1
B_CELL_NAIVE_35
33.1
B_CELL_NAIVE_36
33.0
B_CELL_NAIVE_37
32.9
B_CELL_NAIVE_38
32.8
B_CELL_NAIVE_39
32.5
B_CELL_NAIVE_40
32.2
B_CELL_NAIVE_41
32.0
B_CELL_NAIVE_42
31.5
B_CELL_NAIVE_43
31.3
B_CELL_NAIVE_44
31.3
B_CELL_NAIVE_45
31.2
B_CELL_NAIVE_46
31.1
B_CELL_NAIVE_47
30.9
B_CELL_NAIVE_48
30.6
B_CELL_NAIVE_49
30.6
B_CELL_NAIVE_50
30.3
B_CELL_NAIVE_51
30.2
B_CELL_NAIVE_52
30.2
B_CELL_NAIVE_53
30.1
B_CELL_NAIVE_54
30.1
B_CELL_NAIVE_55
30.0
B_CELL_NAIVE_56
29.8
B_CELL_NAIVE_57
29.8
B_CELL_NAIVE_58
29.7
B_CELL_NAIVE_59
29.7
B_CELL_NAIVE_60
29.5
B_CELL_NAIVE_61
29.2
B_CELL_NAIVE_62
28.9
B_CELL_NAIVE_63
28.8
B_CELL_NAIVE_64
28.8
B_CELL_NAIVE_65
28.7
B_CELL_NAIVE_66
28.7
B_CELL_NAIVE_67
28.6
B_CELL_NAIVE_68
28.6
B_CELL_NAIVE_69
28.6
B_CELL_NAIVE_70
28.4
B_CELL_NAIVE_71
28.4
B_CELL_NAIVE_72
28.3
B_CELL_NAIVE_73
28.3
B_CELL_NAIVE_74
28.2
B_CELL_NAIVE_75
28.1
B_CELL_NAIVE_76
28.0
B_CELL_NAIVE_77
28.0
B_CELL_NAIVE_78
27.9
B_CELL_NAIVE_79
27.6
B_CELL_NAIVE_80
26.8
B_CELL_NAIVE_81
26.8
B_CELL_NAIVE_82
26.2
B_CELL_NAIVE_83
26.2
B_CELL_NAIVE_84
25.9
B_CELL_NAIVE_85
25.9
B_CELL_NAIVE_86
25.6
B_CELL_NAIVE_87
25.2
B_CELL_NAIVE_88
25.0
B_CELL_NAIVE_89
25.0
B_CELL_NAIVE_90
23.9
B_CELL_NAIVE_91
19.6
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