MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:11.2 nTPM
GTEx:14.2 nTPM
FANTOM5:77.4 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:10.9 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.5
2219 Male, age 76, both hemispheres 11.3
1830 Male, age 51, unknown 9.8
1870 Female, age 42, unknown 9.7
1833 Male, age 53, unknown 9.4
2411 Female, age 72, unknown 9.3
2586 Male, age 75, left hemisphere 9.3
2666 Male, age 74, left hemisphere 9.2
2828 Female, age 72, unknown 9.1
2019 Male, age 18, unknown 8.9
1827 Male, age 72, unknown 8.5
Dorsal raphe nucleus
nTPM: 8.6
2750 Male, age 76, both hemispheres 9.3
2047 Male, age 72, unknown 9.0
2298 Female, age 72, unknown 8.4
2016 Female, age 72, unknown 8.2
1828 Male, age 53, unknown 7.9
Inferior colliculus
nTPM: 9.4
2849 Male, age 72, unknown 10.8
1890 Male, age 53, unknown 9.5
1848 Female, age 42, unknown 9.4
2097 Female, age 72, unknown 7.8
Median raphe nucleus
nTPM: 11.2
2220 Male, age 76, midline 11.2
Periaquaductal grey, anterior
nTPM: 8.4
1947 Male, age 18, unknown 8.7
1795 Male, age 51, unknown 8.3
2502 Female, age 75, unknown 8.1
Periaquaductal grey, dorsal
nTPM: 8.5
2850 Male, age 76, both hemispheres 10.4
1831 Male, age 72, unknown 8.5
2464 Female, age 72, unknown 8.1
1840 Male, age 53, unknown 6.9
Periaquaductal grey, lateral
nTPM: 10.3
2140 Male, age 76, both hemispheres 10.9
2272 Male, age 74, both hemispheres 10.2
2053 Male, age 18, unknown 9.7
Pretectal area
nTPM: 8.9
2316 Male, age 76, right hemisphere 10.3
2407 Male, age 75, both hemispheres 9.5
2224 Female, age 72, unknown 9.2
2273 Male, age 74, both hemispheres 9.1
1815 Male, age 53, unknown 9.0
2825 Male, age 18, unknown 9.0
1816 Male, age 51, unknown 8.8
1817 Female, age 42, unknown 8.3
2667 Female, age 75, unknown 8.3
1944 Female, age 72, unknown 8.2
2007 Male, age 72, unknown 7.9
Red nucleus
nTPM: 9.6
2823 Male, age 76, right hemisphere 10.9
2769 Male, age 72, unknown 10.1
1865 Male, age 51, unknown 10.0
1904 Male, age 53, unknown 9.9
2725 Female, age 75, unknown 9.9
2785 Male, age 18, unknown 9.9
2503 Female, age 72, unknown 9.8
2584 Male, age 75, left hemisphere 9.7
2227 Male, age 72, unknown 9.3
2588 Male, age 74, left hemisphere 9.2
1954 Female, age 42, unknown 8.7
1821 Female, age 72, unknown 7.5
Substantia nigra
nTPM: 8.2
2583 Male, age 75, right hemisphere 9.1
2590 Female, age 75, unknown 8.9
2699 Male, age 18, unknown 8.8
1889 Female, age 72, unknown 8.4
2665 Male, age 74, both hemispheres 8.4
2409 Female, age 72, unknown 8.2
1941 Male, age 53, unknown 8.0
1916 Female, age 42, unknown 7.7
1851 Male, age 51, unknown 7.6
2241 Male, age 72, unknown 6.8
Superior colliculus
nTPM: 9.1
1995 Male, age 72, unknown 10.4
1913 Female, age 42, unknown 10.2
1895 Male, age 76, right hemisphere 9.8
1796 Male, age 53, unknown 9.5
1839 Male, age 51, unknown 8.8
2668 Female, age 75, unknown 8.8
2087 Female, age 72, unknown 8.5
2261 Male, age 18, unknown 8.5
2587 Male, age 74, left hemisphere 8.1
2664 Male, age 75, both hemispheres 8.1
Ventral tegmental area
nTPM: 8.5
2021 Male, age 53, unknown 9.9
2223 Female, age 72, unknown 9.2
2218 Male, age 76, both hemispheres 8.8
1942 Male, age 51, unknown 8.6
1915 Female, age 42, unknown 7.5
2410 Female, age 72, unknown 6.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 183

Max nTPM: 28.2
Min nTPM: 5.2
Std nTPM: 3.8
Median nTPM: 13.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 27.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 23.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 22.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 22.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 22.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 21.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 21.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 21.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.4
FF:10158-103A5 76 years, female 77.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.0
Samples: 4

Max nTPM: 32.5
Min nTPM: 17.0
Sample A Female 17.0
Sample B Female 28.5
Sample C Male 26.1
Sample D Male 32.5
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 26.4
Min nTPM: 20.2
Sample A Female 20.2
Sample B Female 26.4
Sample C Male 24.5
Sample D Male 26.3
Periaqueductal gray
nTPM: 27.0
Samples: 3

Max nTPM: 28.6
Min nTPM: 25.5
Sample B Female 26.9
Sample C Male 25.5
Sample D Male 28.6
Superior colliculi
nTPM: 22.6
Samples: 4

Max nTPM: 25.2
Min nTPM: 17.1
Sample A Female 17.1
Sample B Female 23.9
Sample C Male 24.1
Sample D Male 25.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 11.3
Min nTPM: 10.3
Sample A Male 10.7
Sample B Male 11.3
Sample C Female 11.1
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69672539 Antisense, RP_050428_04_A03, Mouse strain C57BL/6J (56 days, male) 4.0

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