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  • HSPA8
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:501.1 nTPM
HPA Brain:864.9 nTPM
GTEx:501.1 nTPM
FANTOM5:1204.0 Scaled Tags Per Million
Pig:1250.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

864.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 743.6
1981 Female, age 72, midline 906.0
2194 Female, age 79, both hemispheres 735.2
2565 Male, age 75, midline 713.5
2048 Male, age 55, midline 707.1
2816 Male, age 47, midline 656.4
Cervical spinal cord, dorsal horn
nTPM: 864.9
2296 Male, age 66, both hemispheres 1167.0
2173 Female, age 72, unknown 1054.3
2069 Male, age 47, both hemispheres 895.3
2297 Male, age 75, both hemispheres 733.9
1877 Male, age 55, unknown 669.9
2721 Male, age 90, both hemispheres 669.2
Cervical spinal cord, ventral horn
nTPM: 753.7
2098 Female, age 72, unknown 894.9
2480 Male, age 75, both hemispheres 818.6
2068 Male, age 55, unknown 763.2
2809 Male, age 90, both hemispheres 757.0
2295 Male, age 66, both hemispheres 659.3
2820 Female, age 79, both hemispheres 629.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

501.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 501.1
Samples: 204

Max nTPM: 2095.5
Min nTPM: 162.3
Std nTPM: 206.5
Median nTPM: 482.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2095.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1245.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1091.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1003.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 991.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 965.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 920.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 884.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 868.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 860.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 854.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 846.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 843.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 823.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 812.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 763.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 754.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 726.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 723.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 699.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 690.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 688.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 682.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 681.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 674.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 662.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 660.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 657.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 657.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 656.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 656.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 653.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 651.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 647.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 645.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 644.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 637.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 628.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 626.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 617.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 611.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 593.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 592.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 587.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 586.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 586.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 581.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 581.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 579.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 572.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 569.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 566.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 566.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 562.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 559.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 558.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 555.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 554.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 553.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 553.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 551.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 550.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 549.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 548.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 544.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 540.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 539.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 537.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 536.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 535.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 530.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 530.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 528.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 527.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 527.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 520.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 520.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 518.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 516.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 515.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 513.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 510.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 509.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 507.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 503.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 499.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 499.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 498.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 495.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 495.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 494.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 494.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 492.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 490.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 488.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 487.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 486.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 485.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 485.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 483.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 483.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 482.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 481.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 475.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 470.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 466.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 466.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 464.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 463.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 462.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 461.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 461.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 459.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 458.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 457.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 457.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 456.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 454.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 453.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 451.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 445.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 441.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 441.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 437.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 436.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 436.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 433.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 430.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 429.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 428.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 423.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 419.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 417.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 415.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 414.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 413.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 409.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 409.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 409.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 407.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 405.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 404.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 400.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 399.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 397.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 396.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 393.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 384.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 382.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 381.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 379.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 378.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 378.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 374.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 374.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 373.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 373.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 370.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 369.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 358.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 357.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 357.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 357.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 356.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 355.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 353.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 352.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 352.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 350.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 349.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 341.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 331.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 329.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 327.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 322.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 318.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 315.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 314.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 314.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 312.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 310.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 303.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 300.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 299.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 297.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 294.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 293.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 289.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 282.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 282.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 268.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 268.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 255.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 246.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 246.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 236.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 235.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 222.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 210.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 203.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 201.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 168.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 165.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 162.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1204.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1204.0
FF:10159-103A6 76 years, female 1303.2
FF:10181-103D1 60 years, female 1104.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1250.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 945.6
Samples: 4

Max nTPM: 1006.2
Min nTPM: 883.9
Sample A Female 991.5
Sample B Female 900.7
Sample C Male 883.9
Sample D Male 1006.2
Ventral spinal cord
nTPM: 1250.4
Samples: 4

Max nTPM: 1406.3
Min nTPM: 1176.0
Sample A Female 1225.4
Sample B Female 1406.3
Sample C Male 1176.0
Sample D Male 1194.0

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