MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA Brain:43.9 nTPM
GTEx:48.3 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:44.6 nTPM
Mouse:17.4 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.0
2586 Male, age 75, left hemisphere 50.3
2666 Male, age 74, left hemisphere 45.8
2019 Male, age 18, unknown 44.1
2828 Female, age 72, unknown 41.5
1827 Male, age 72, unknown 39.9
1833 Male, age 53, unknown 35.1
1830 Male, age 51, unknown 33.0
2219 Male, age 76, both hemispheres 32.9
1870 Female, age 42, unknown 31.5
2411 Female, age 72, unknown 26.1
Dorsal raphe nucleus
nTPM: 31.6
2016 Female, age 72, unknown 34.3
1828 Male, age 53, unknown 34.1
2298 Female, age 72, unknown 29.9
2047 Male, age 72, unknown 29.8
2750 Male, age 76, both hemispheres 29.8
Inferior colliculus
nTPM: 37.2
1890 Male, age 53, unknown 39.1
2849 Male, age 72, unknown 37.8
2097 Female, age 72, unknown 36.6
1848 Female, age 42, unknown 35.5
Median raphe nucleus
nTPM: 27.5
2220 Male, age 76, midline 27.5
Periaquaductal grey, anterior
nTPM: 39.2
1795 Male, age 51, unknown 42.9
1947 Male, age 18, unknown 38.8
2502 Female, age 75, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 35.0
1831 Male, age 72, unknown 40.2
2850 Male, age 76, both hemispheres 37.4
1840 Male, age 53, unknown 32.9
2464 Female, age 72, unknown 29.5
Periaquaductal grey, lateral
nTPM: 33.9
2272 Male, age 74, both hemispheres 42.7
2053 Male, age 18, unknown 29.5
2140 Male, age 76, both hemispheres 29.5
Pretectal area
nTPM: 43.9
1817 Female, age 42, unknown 62.1
2007 Male, age 72, unknown 61.0
1816 Male, age 51, unknown 56.0
1815 Male, age 53, unknown 50.7
1944 Female, age 72, unknown 47.5
2667 Female, age 75, unknown 43.8
2273 Male, age 74, both hemispheres 35.9
2407 Male, age 75, both hemispheres 35.6
2825 Male, age 18, unknown 32.7
2316 Male, age 76, right hemisphere 29.0
2224 Female, age 72, unknown 28.7
Red nucleus
nTPM: 39.9
2785 Male, age 18, unknown 47.5
2588 Male, age 74, left hemisphere 43.2
2584 Male, age 75, left hemisphere 42.7
2823 Male, age 76, right hemisphere 40.8
2503 Female, age 72, unknown 39.9
2769 Male, age 72, unknown 39.8
1865 Male, age 51, unknown 39.5
1821 Female, age 72, unknown 39.0
1904 Male, age 53, unknown 37.6
2227 Male, age 72, unknown 37.2
2725 Female, age 75, unknown 36.9
1954 Female, age 42, unknown 35.3
Substantia nigra
nTPM: 38.5
2665 Male, age 74, both hemispheres 53.1
1889 Female, age 72, unknown 43.9
1916 Female, age 42, unknown 42.1
2583 Male, age 75, right hemisphere 41.8
1941 Male, age 53, unknown 39.3
2699 Male, age 18, unknown 38.4
2590 Female, age 75, unknown 38.2
1851 Male, age 51, unknown 36.5
2409 Female, age 72, unknown 28.2
2241 Male, age 72, unknown 23.8
Superior colliculus
nTPM: 40.4
2664 Male, age 75, both hemispheres 52.2
2087 Female, age 72, unknown 45.5
2668 Female, age 75, unknown 45.1
2261 Male, age 18, unknown 41.3
1995 Male, age 72, unknown 39.5
1796 Male, age 53, unknown 37.9
2587 Male, age 74, left hemisphere 36.4
1913 Female, age 42, unknown 36.3
1839 Male, age 51, unknown 35.5
1895 Male, age 76, right hemisphere 34.4
Ventral tegmental area
nTPM: 32.8
2410 Female, age 72, unknown 38.2
2218 Male, age 76, both hemispheres 34.4
1915 Female, age 42, unknown 34.1
2223 Female, age 72, unknown 31.1
1942 Male, age 51, unknown 29.9
2021 Male, age 53, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.3
Samples: 183

Max nTPM: 91.7
Min nTPM: 23.1
Std nTPM: 11.0
Median nTPM: 47.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 91.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 80.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 76.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 76.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 75.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 73.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 71.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 71.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 68.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 67.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 66.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.5
FF:10158-103A5 76 years, female 31.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.6
Samples: 4

Max nTPM: 45.1
Min nTPM: 27.5
Sample A Female 45.1
Sample B Female 32.8
Sample C Male 27.5
Sample D Male 32.9
Midbrain
nTPM: 42.9
Samples: 4

Max nTPM: 48.8
Min nTPM: 33.1
Sample A Female 46.3
Sample B Female 33.1
Sample C Male 48.8
Sample D Male 43.3
Periaqueductal gray
nTPM: 33.5
Samples: 3

Max nTPM: 35.4
Min nTPM: 30.7
Sample B Female 35.4
Sample C Male 34.3
Sample D Male 30.7
Superior colliculi
nTPM: 44.6
Samples: 4

Max nTPM: 54.5
Min nTPM: 37.9
Sample A Female 54.5
Sample B Female 37.9
Sample C Male 44.9
Sample D Male 41.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 19.8
Min nTPM: 14.2
Sample A Male 19.8
Sample B Male 15.8
Sample C Female 14.2
Sample D Female 19.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
69262343 Antisense, RP_050303_02_C01, Mouse strain C57BL/6J (56 days, male) 3.6

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