MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:15.8 nTPM
GTEx:12.3 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:6.7 nTPM
Mouse:3.0 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.4
2586 Male, age 75, left hemisphere 16.7
1870 Female, age 42, unknown 13.8
2411 Female, age 72, unknown 12.9
1830 Male, age 51, unknown 12.7
2019 Male, age 18, unknown 12.4
1833 Male, age 53, unknown 11.7
2828 Female, age 72, unknown 11.7
1827 Male, age 72, unknown 11.3
2666 Male, age 74, left hemisphere 11.3
2219 Male, age 76, both hemispheres 10.1
Dorsal raphe nucleus
nTPM: 12.9
2298 Female, age 72, unknown 14.3
2750 Male, age 76, both hemispheres 13.8
2047 Male, age 72, unknown 13.4
1828 Male, age 53, unknown 11.8
2016 Female, age 72, unknown 11.0
Inferior colliculus
nTPM: 11.5
2849 Male, age 72, unknown 12.7
1848 Female, age 42, unknown 11.6
2097 Female, age 72, unknown 11.2
1890 Male, age 53, unknown 10.6
Median raphe nucleus
nTPM: 15.8
2220 Male, age 76, midline 15.8
Periaquaductal grey, anterior
nTPM: 12.1
2502 Female, age 75, unknown 13.0
1795 Male, age 51, unknown 11.7
1947 Male, age 18, unknown 11.7
Periaquaductal grey, dorsal
nTPM: 9.4
1831 Male, age 72, unknown 10.1
2850 Male, age 76, both hemispheres 9.9
2464 Female, age 72, unknown 9.3
1840 Male, age 53, unknown 8.5
Periaquaductal grey, lateral
nTPM: 10.2
2272 Male, age 74, both hemispheres 11.1
2053 Male, age 18, unknown 10.1
2140 Male, age 76, both hemispheres 9.5
Pretectal area
nTPM: 11.0
2407 Male, age 75, both hemispheres 13.0
2007 Male, age 72, unknown 12.2
1817 Female, age 42, unknown 12.1
2825 Male, age 18, unknown 11.3
1815 Male, age 53, unknown 11.1
2224 Female, age 72, unknown 11.1
2273 Male, age 74, both hemispheres 10.5
2667 Female, age 75, unknown 10.4
1816 Male, age 51, unknown 9.9
1944 Female, age 72, unknown 9.6
2316 Male, age 76, right hemisphere 9.2
Red nucleus
nTPM: 14.7
1904 Male, age 53, unknown 16.7
1865 Male, age 51, unknown 15.9
1821 Female, age 72, unknown 15.5
2769 Male, age 72, unknown 15.5
2227 Male, age 72, unknown 14.8
1954 Female, age 42, unknown 14.7
2584 Male, age 75, left hemisphere 14.6
2588 Male, age 74, left hemisphere 14.5
2725 Female, age 75, unknown 14.5
2785 Male, age 18, unknown 13.4
2503 Female, age 72, unknown 13.2
2823 Male, age 76, right hemisphere 13.1
Substantia nigra
nTPM: 13.6
1916 Female, age 42, unknown 19.0
2699 Male, age 18, unknown 17.3
1851 Male, age 51, unknown 15.4
1941 Male, age 53, unknown 14.0
1889 Female, age 72, unknown 13.4
2583 Male, age 75, right hemisphere 13.1
2590 Female, age 75, unknown 12.6
2665 Male, age 74, both hemispheres 10.6
2241 Male, age 72, unknown 10.2
2409 Female, age 72, unknown 9.9
Superior colliculus
nTPM: 11.1
1796 Male, age 53, unknown 13.1
2587 Male, age 74, left hemisphere 13.0
1913 Female, age 42, unknown 11.7
2664 Male, age 75, both hemispheres 11.7
2668 Female, age 75, unknown 11.5
1839 Male, age 51, unknown 11.2
1995 Male, age 72, unknown 10.6
2087 Female, age 72, unknown 9.7
2261 Male, age 18, unknown 9.3
1895 Male, age 76, right hemisphere 9.2
Ventral tegmental area
nTPM: 13.6
2223 Female, age 72, unknown 15.0
1915 Female, age 42, unknown 14.6
2410 Female, age 72, unknown 13.8
2218 Male, age 76, both hemispheres 13.5
2021 Male, age 53, unknown 12.9
1942 Male, age 51, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 183

Max nTPM: 31.6
Min nTPM: 5.9
Std nTPM: 3.5
Median nTPM: 11.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 31.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 23.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 21.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 21.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 20.0
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 19.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 18.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 17.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 17.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.7
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.8
Sample A Female 7.8
Sample B Female 6.0
Sample C Male 5.8
Sample D Male 7.2
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 11.1
Min nTPM: 4.7
Sample A Female 11.1
Sample B Female 6.0
Sample C Male 4.8
Sample D Male 4.7
Periaqueductal gray
nTPM: 5.9
Samples: 3

Max nTPM: 6.2
Min nTPM: 5.7
Sample B Female 6.2
Sample C Male 5.7
Sample D Male 5.8
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.3
Sample A Female 7.0
Sample B Female 4.3
Sample C Male 6.0
Sample D Male 5.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.0
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.9
Sample A Male 3.3
Sample B Male 3.0
Sample C Female 2.9
Sample D Female 2.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68920650 Antisense, RP_050303_01_A03, Mouse strain C57BL/6J (56 days, male) 0.1

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