MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.1 nTPM
HPA Brain:40.5 nTPM
GTEx:77.1 nTPM
FANTOM5:8.9 Scaled Tags Per Million
Pig:78.8 nTPM
Mouse:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.7
2219 Male, age 76, both hemispheres 42.8
2666 Male, age 74, left hemisphere 37.9
1827 Male, age 72, unknown 36.6
2586 Male, age 75, left hemisphere 35.9
2019 Male, age 18, unknown 34.9
1833 Male, age 53, unknown 34.8
1870 Female, age 42, unknown 34.4
2411 Female, age 72, unknown 33.7
1830 Male, age 51, unknown 33.6
2828 Female, age 72, unknown 32.7
Dorsal raphe nucleus
nTPM: 36.1
2047 Male, age 72, unknown 37.0
1828 Male, age 53, unknown 36.9
2016 Female, age 72, unknown 36.7
2298 Female, age 72, unknown 35.6
2750 Male, age 76, both hemispheres 34.2
Inferior colliculus
nTPM: 36.4
2097 Female, age 72, unknown 37.5
2849 Male, age 72, unknown 37.4
1890 Male, age 53, unknown 36.8
1848 Female, age 42, unknown 34.0
Median raphe nucleus
nTPM: 36.2
2220 Male, age 76, midline 36.2
Periaquaductal grey, anterior
nTPM: 33.6
1947 Male, age 18, unknown 34.7
1795 Male, age 51, unknown 34.1
2502 Female, age 75, unknown 32.0
Periaquaductal grey, dorsal
nTPM: 34.1
2850 Male, age 76, both hemispheres 35.8
1831 Male, age 72, unknown 34.5
2464 Female, age 72, unknown 34.4
1840 Male, age 53, unknown 31.6
Periaquaductal grey, lateral
nTPM: 32.9
2272 Male, age 74, both hemispheres 33.7
2140 Male, age 76, both hemispheres 32.9
2053 Male, age 18, unknown 32.0
Pretectal area
nTPM: 34.6
1815 Male, age 53, unknown 37.8
1944 Female, age 72, unknown 37.5
1816 Male, age 51, unknown 36.3
1817 Female, age 42, unknown 35.9
2316 Male, age 76, right hemisphere 35.6
2007 Male, age 72, unknown 34.2
2224 Female, age 72, unknown 34.1
2825 Male, age 18, unknown 33.9
2667 Female, age 75, unknown 32.7
2273 Male, age 74, both hemispheres 32.6
2407 Male, age 75, both hemispheres 29.9
Red nucleus
nTPM: 37.6
2725 Female, age 75, unknown 41.7
2588 Male, age 74, left hemisphere 40.8
2584 Male, age 75, left hemisphere 39.6
2503 Female, age 72, unknown 38.5
2227 Male, age 72, unknown 38.4
1904 Male, age 53, unknown 37.7
2769 Male, age 72, unknown 37.6
2823 Male, age 76, right hemisphere 37.6
1954 Female, age 42, unknown 36.6
1865 Male, age 51, unknown 34.9
2785 Male, age 18, unknown 34.3
1821 Female, age 72, unknown 33.6
Substantia nigra
nTPM: 40.5
1916 Female, age 42, unknown 46.8
2699 Male, age 18, unknown 44.5
1851 Male, age 51, unknown 41.6
1941 Male, age 53, unknown 41.4
2241 Male, age 72, unknown 40.2
2409 Female, age 72, unknown 39.8
2590 Female, age 75, unknown 39.5
2583 Male, age 75, right hemisphere 37.9
1889 Female, age 72, unknown 37.0
2665 Male, age 74, both hemispheres 35.8
Superior colliculus
nTPM: 35.2
2587 Male, age 74, left hemisphere 38.0
1796 Male, age 53, unknown 37.0
1839 Male, age 51, unknown 36.4
2664 Male, age 75, both hemispheres 36.3
2261 Male, age 18, unknown 36.1
2668 Female, age 75, unknown 35.8
1895 Male, age 76, right hemisphere 35.3
2087 Female, age 72, unknown 35.0
1995 Male, age 72, unknown 31.7
1913 Female, age 42, unknown 30.7
Ventral tegmental area
nTPM: 38.3
1915 Female, age 42, unknown 41.4
2223 Female, age 72, unknown 39.8
2218 Male, age 76, both hemispheres 38.7
1942 Male, age 51, unknown 38.3
2410 Female, age 72, unknown 37.4
2021 Male, age 53, unknown 34.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.1
Samples: 183

Max nTPM: 177.7
Min nTPM: 25.1
Std nTPM: 20.0
Median nTPM: 74.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 177.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 127.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 125.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 120.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 119.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 116.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 115.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 115.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 114.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 111.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 110.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.9
FF:10158-103A5 76 years, female 8.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 78.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.8
Samples: 4

Max nTPM: 97.7
Min nTPM: 67.6
Sample A Female 97.7
Sample B Female 67.6
Sample C Male 75.5
Sample D Male 74.4
Midbrain
nTPM: 78.6
Samples: 4

Max nTPM: 112.9
Min nTPM: 60.4
Sample A Female 112.9
Sample B Female 75.2
Sample C Male 66.0
Sample D Male 60.4
Periaqueductal gray
nTPM: 69.8
Samples: 3

Max nTPM: 73.7
Min nTPM: 64.9
Sample B Female 70.9
Sample C Male 73.7
Sample D Male 64.9
Superior colliculi
nTPM: 76.8
Samples: 4

Max nTPM: 96.3
Min nTPM: 64.0
Sample A Female 96.3
Sample B Female 64.0
Sample C Male 73.3
Sample D Male 73.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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