A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
70.3
nTPM
Monaco:
127.0
nTPM
Schmiedel:
100.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.3
HPA sample
nTPM
Memory B-cell nTPM: 67.8
Samples: 6
Max nTPM: 95.2
Min nTPM: 48.0
P10809_1017
48.0
P10809_1025
60.4
P10809_1044
95.2
P10809_1063
77.3
P10809_1092
56.7
P10809_1105
69.4
Naive B-cell nTPM: 70.3
Samples: 6
Max nTPM: 158.2
Min nTPM: 44.0
P10809_1011
44.0
P10809_1029
44.1
P10809_1048
158.2
P10809_1067
47.5
P10809_1091
66.4
P10809_1104
61.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 124.8
Samples: 4
Max nTPM: 210.5
Min nTPM: 83.0
RHH5310_R3677
119.9
RHH5218_R3590
85.8
RHH5247_R3619
210.5
RHH5276_R3648
83.0
Naive B-cell nTPM: 124.9
Samples: 4
Max nTPM: 150.9
Min nTPM: 103.1
RHH5308_R3675
120.9
RHH5216_R3588
124.8
RHH5245_R3617
150.9
RHH5274_R3646
103.1
Non-switched memory B-cell nTPM: 127.0
Samples: 4
Max nTPM: 178.0
Min nTPM: 100.0
RHH5309_R3676
126.1
RHH5217_R3589
100.0
RHH5246_R3618
178.0
RHH5275_R3647
103.9
Plasmablast nTPM: 17.5
Samples: 4
Max nTPM: 22.3
Min nTPM: 13.8
RHH5312_R3679
17.0
RHH5220_R3592
13.8
RHH5249_R3621
22.3
RHH5278_R3650
16.9
Switched memory B-cell nTPM: 111.1
Samples: 4
Max nTPM: 133.0
Min nTPM: 78.6
RHH5311_R3678
118.4
RHH5219_R3591
78.6
RHH5248_R3620
133.0
RHH5277_R3649
114.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.1
Schmiedel sample id
TPM
Naive B-cell TPM: 100.1
Samples: 91
Max TPM: 167.0
Min TPM: 59.0
B_CELL_NAIVE_1
167.0
B_CELL_NAIVE_2
162.6
B_CELL_NAIVE_3
161.5
B_CELL_NAIVE_4
149.5
B_CELL_NAIVE_5
139.9
B_CELL_NAIVE_6
135.7
B_CELL_NAIVE_7
130.6
B_CELL_NAIVE_8
127.2
B_CELL_NAIVE_9
125.4
B_CELL_NAIVE_10
123.1
B_CELL_NAIVE_11
122.7
B_CELL_NAIVE_12
122.3
B_CELL_NAIVE_13
120.6
B_CELL_NAIVE_14
120.6
B_CELL_NAIVE_15
119.7
B_CELL_NAIVE_16
118.6
B_CELL_NAIVE_17
116.0
B_CELL_NAIVE_18
112.4
B_CELL_NAIVE_19
111.1
B_CELL_NAIVE_20
110.3
B_CELL_NAIVE_21
110.2
B_CELL_NAIVE_22
109.8
B_CELL_NAIVE_23
109.6
B_CELL_NAIVE_24
108.8
B_CELL_NAIVE_25
108.4
B_CELL_NAIVE_26
108.3
B_CELL_NAIVE_27
107.3
B_CELL_NAIVE_28
105.5
B_CELL_NAIVE_29
105.4
B_CELL_NAIVE_30
105.2
B_CELL_NAIVE_31
105.2
B_CELL_NAIVE_32
104.5
B_CELL_NAIVE_33
104.0
B_CELL_NAIVE_34
103.6
B_CELL_NAIVE_35
103.4
B_CELL_NAIVE_36
103.2
B_CELL_NAIVE_37
103.0
B_CELL_NAIVE_38
102.8
B_CELL_NAIVE_39
102.5
B_CELL_NAIVE_40
102.4
B_CELL_NAIVE_41
101.9
B_CELL_NAIVE_42
100.8
B_CELL_NAIVE_43
99.9
B_CELL_NAIVE_44
99.8
B_CELL_NAIVE_45
98.5
B_CELL_NAIVE_46
98.2
B_CELL_NAIVE_47
97.5
B_CELL_NAIVE_48
96.9
B_CELL_NAIVE_49
96.8
B_CELL_NAIVE_50
96.7
B_CELL_NAIVE_51
96.7
B_CELL_NAIVE_52
95.5
B_CELL_NAIVE_53
95.2
B_CELL_NAIVE_54
95.2
B_CELL_NAIVE_55
94.1
B_CELL_NAIVE_56
94.1
B_CELL_NAIVE_57
93.4
B_CELL_NAIVE_58
93.0
B_CELL_NAIVE_59
92.5
B_CELL_NAIVE_60
92.3
B_CELL_NAIVE_61
92.2
B_CELL_NAIVE_62
92.2
B_CELL_NAIVE_63
91.2
B_CELL_NAIVE_64
90.2
B_CELL_NAIVE_65
87.4
B_CELL_NAIVE_66
87.3
B_CELL_NAIVE_67
86.8
B_CELL_NAIVE_68
85.9
B_CELL_NAIVE_69
85.3
B_CELL_NAIVE_70
84.5
B_CELL_NAIVE_71
84.5
B_CELL_NAIVE_72
84.4
B_CELL_NAIVE_73
83.2
B_CELL_NAIVE_74
81.7
B_CELL_NAIVE_75
80.4
B_CELL_NAIVE_76
80.2
B_CELL_NAIVE_77
79.2
B_CELL_NAIVE_78
79.2
B_CELL_NAIVE_79
79.0
B_CELL_NAIVE_80
78.5
B_CELL_NAIVE_81
76.6
B_CELL_NAIVE_82
75.4
B_CELL_NAIVE_83
74.5
B_CELL_NAIVE_84
73.5
B_CELL_NAIVE_85
73.2
B_CELL_NAIVE_86
73.2
B_CELL_NAIVE_87
69.5
B_CELL_NAIVE_88
69.5
B_CELL_NAIVE_89
67.6
B_CELL_NAIVE_90
66.8
B_CELL_NAIVE_91
59.0
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The Human Protein Atlas project is funded
