A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
107.0
nTPM
Monaco:
140.5
nTPM
Schmiedel:
78.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.0
HPA sample
nTPM
Classical monocyte nTPM: 52.4
Samples: 6
Max nTPM: 79.3
Min nTPM: 34.8
P10809_1003
38.1
P10809_1020
69.0
P10809_1039
79.3
P10809_1058
34.8
P10809_1080
48.5
P10809_1107
44.6
Intermediate monocyte nTPM: 107.0
Samples: 6
Max nTPM: 168.0
Min nTPM: 80.9
P10809_1004
80.9
P10809_1023
168.0
P10809_1042
118.6
P10809_1061
83.6
P10809_1081
92.2
P10809_1108
98.8
Non-classical monocyte nTPM: 104.5
Samples: 5
Max nTPM: 154.4
Min nTPM: 76.9
P10809_1005
86.3
P10809_1053
111.6
P10809_1072
154.4
P10809_1082
76.9
P10809_1109
93.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
140.5
Monaco sample
nTPM
Classical monocyte nTPM: 105.9
Samples: 4
Max nTPM: 145.7
Min nTPM: 84.7
RHH5313_R3680
87.9
RHH5221_R3593
105.3
RHH5250_R3622
145.7
RHH5279_R3651
84.7
Intermediate monocyte nTPM: 140.1
Samples: 4
Max nTPM: 158.6
Min nTPM: 124.8
RHH5314_R3681
139.4
RHH5222_R3594
137.6
RHH5251_R3623
124.8
RHH5280_R3652
158.6
Non-classical monocyte nTPM: 140.5
Samples: 4
Max nTPM: 170.5
Min nTPM: 118.7
RHH5315_R3682
118.7
RHH5223_R3595
127.1
RHH5252_R3624
145.5
RHH5281_R3653
170.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.9
Schmiedel sample id
TPM
Classical monocyte TPM: 38.5
Samples: 91
Max TPM: 56.6
Min TPM: 23.1
MONOCYTES_1
56.6
MONOCYTES_2
54.6
MONOCYTES_3
53.8
MONOCYTES_4
52.6
MONOCYTES_5
52.4
MONOCYTES_6
52.4
MONOCYTES_7
51.6
MONOCYTES_8
50.6
MONOCYTES_9
50.4
MONOCYTES_10
49.9
MONOCYTES_11
49.9
MONOCYTES_12
48.0
MONOCYTES_13
46.6
MONOCYTES_14
46.5
MONOCYTES_15
46.3
MONOCYTES_16
46.3
MONOCYTES_17
45.5
MONOCYTES_18
45.3
MONOCYTES_19
45.0
MONOCYTES_20
44.8
MONOCYTES_21
44.8
MONOCYTES_22
44.8
MONOCYTES_23
44.4
MONOCYTES_24
43.3
MONOCYTES_25
43.2
MONOCYTES_26
42.9
MONOCYTES_27
42.3
MONOCYTES_28
42.3
MONOCYTES_29
42.1
MONOCYTES_30
41.7
MONOCYTES_31
41.2
MONOCYTES_32
41.1
MONOCYTES_33
41.0
MONOCYTES_34
40.7
MONOCYTES_35
40.6
MONOCYTES_36
40.4
MONOCYTES_37
40.4
MONOCYTES_38
40.1
MONOCYTES_39
39.9
MONOCYTES_40
39.8
MONOCYTES_41
39.8
MONOCYTES_42
39.3
MONOCYTES_43
38.9
MONOCYTES_44
38.6
MONOCYTES_45
37.5
MONOCYTES_46
37.4
MONOCYTES_47
37.4
MONOCYTES_48
37.3
MONOCYTES_49
37.1
MONOCYTES_50
36.8
MONOCYTES_51
36.8
MONOCYTES_52
36.4
MONOCYTES_53
36.1
MONOCYTES_54
36.1
MONOCYTES_55
35.9
MONOCYTES_56
35.2
MONOCYTES_57
34.6
MONOCYTES_58
34.5
MONOCYTES_59
34.5
MONOCYTES_60
34.3
MONOCYTES_61
34.1
MONOCYTES_62
34.0
MONOCYTES_63
34.0
MONOCYTES_64
33.4
MONOCYTES_65
33.4
MONOCYTES_66
33.1
MONOCYTES_67
33.0
MONOCYTES_68
32.7
MONOCYTES_69
32.6
MONOCYTES_70
32.3
MONOCYTES_71
31.9
MONOCYTES_72
31.9
MONOCYTES_73
31.8
MONOCYTES_74
31.7
MONOCYTES_75
31.1
MONOCYTES_76
31.0
MONOCYTES_77
30.3
MONOCYTES_78
29.8
MONOCYTES_79
29.8
MONOCYTES_80
29.7
MONOCYTES_81
29.7
MONOCYTES_82
28.9
MONOCYTES_83
28.6
MONOCYTES_84
28.4
MONOCYTES_85
27.8
MONOCYTES_86
27.4
MONOCYTES_87
26.8
MONOCYTES_88
26.5
MONOCYTES_89
25.7
MONOCYTES_90
25.4
MONOCYTES_91
23.1
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Non-classical monocyte TPM: 78.9
Samples: 90
Max TPM: 117.5
Min TPM: 47.4
M2_1
117.5
M2_2
114.5
M2_3
109.5
M2_4
107.8
M2_5
107.1
M2_6
105.8
M2_7
103.7
M2_8
103.4
M2_9
101.9
M2_10
98.0
M2_11
97.7
M2_12
96.3
M2_13
94.2
M2_14
93.6
M2_15
93.5
M2_16
93.0
M2_17
92.6
M2_18
92.6
M2_19
91.7
M2_20
91.3
M2_21
91.0
M2_22
90.9
M2_23
90.7
M2_24
90.6
M2_25
88.4
M2_26
86.7
M2_27
86.7
M2_28
86.6
M2_29
85.8
M2_30
85.4
M2_31
83.1
M2_32
82.3
M2_33
82.3
M2_34
82.3
M2_35
81.7
M2_36
81.4
M2_37
81.1
M2_38
80.3
M2_39
80.2
M2_40
80.1
M2_41
78.6
M2_42
78.4
M2_43
77.5
M2_44
76.9
M2_45
76.5
M2_46
76.4
M2_47
76.1
M2_48
76.0
M2_49
75.9
M2_50
75.7
M2_51
75.1
M2_52
75.0
M2_53
74.8
M2_54
74.5
M2_55
74.2
M2_56
72.9
M2_57
72.5
M2_58
72.5
M2_59
72.4
M2_60
71.5
M2_61
71.5
M2_62
71.3
M2_63
71.1
M2_64
70.9
M2_65
68.8
M2_66
68.0
M2_67
68.0
M2_68
67.6
M2_69
67.5
M2_70
67.3
M2_71
67.3
M2_72
66.6
M2_73
66.3
M2_74
66.3
M2_75
65.9
M2_76
65.9
M2_77
65.3
M2_78
62.9
M2_79
62.0
M2_80
60.5
M2_81
60.4
M2_82
59.6
M2_83
59.1
M2_84
58.3
M2_85
57.7
M2_86
55.1
M2_87
55.1
M2_88
53.1
M2_89
47.9
M2_90
47.4
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