MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.1 nTPM
HPA Brain:28.8 nTPM
GTEx:5.1 nTPM
FANTOM5:55.5 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:19.7 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.4
2586 Male, age 75, left hemisphere 31.4
2828 Female, age 72, unknown 30.4
2411 Female, age 72, unknown 29.6
1827 Male, age 72, unknown 28.7
2019 Male, age 18, unknown 28.7
1830 Male, age 51, unknown 28.5
2666 Male, age 74, left hemisphere 28.3
1833 Male, age 53, unknown 27.5
2219 Male, age 76, both hemispheres 26.4
1870 Female, age 42, unknown 24.3
Dorsal raphe nucleus
nTPM: 24.4
2047 Male, age 72, unknown 25.8
2750 Male, age 76, both hemispheres 25.8
2298 Female, age 72, unknown 23.9
1828 Male, age 53, unknown 23.5
2016 Female, age 72, unknown 23.2
Inferior colliculus
nTPM: 26.3
2849 Male, age 72, unknown 27.9
1890 Male, age 53, unknown 27.2
1848 Female, age 42, unknown 26.0
2097 Female, age 72, unknown 24.0
Median raphe nucleus
nTPM: 25.3
2220 Male, age 76, midline 25.3
Periaquaductal grey, anterior
nTPM: 28.5
2502 Female, age 75, unknown 29.2
1947 Male, age 18, unknown 29.0
1795 Male, age 51, unknown 27.3
Periaquaductal grey, dorsal
nTPM: 25.9
2464 Female, age 72, unknown 26.7
1840 Male, age 53, unknown 26.2
1831 Male, age 72, unknown 25.7
2850 Male, age 76, both hemispheres 24.9
Periaquaductal grey, lateral
nTPM: 26.7
2140 Male, age 76, both hemispheres 27.4
2053 Male, age 18, unknown 26.5
2272 Male, age 74, both hemispheres 26.3
Pretectal area
nTPM: 28.3
1816 Male, age 51, unknown 31.2
2407 Male, age 75, both hemispheres 30.9
2007 Male, age 72, unknown 29.7
2667 Female, age 75, unknown 29.6
2316 Male, age 76, right hemisphere 29.3
1817 Female, age 42, unknown 28.6
2825 Male, age 18, unknown 28.2
1815 Male, age 53, unknown 27.5
1944 Female, age 72, unknown 27.0
2273 Male, age 74, both hemispheres 24.8
2224 Female, age 72, unknown 24.5
Red nucleus
nTPM: 28.4
2588 Male, age 74, left hemisphere 31.7
2584 Male, age 75, left hemisphere 31.2
2823 Male, age 76, right hemisphere 30.8
1865 Male, age 51, unknown 29.5
2503 Female, age 72, unknown 29.3
1904 Male, age 53, unknown 29.1
2785 Male, age 18, unknown 27.7
2769 Male, age 72, unknown 27.4
1821 Female, age 72, unknown 26.7
2227 Male, age 72, unknown 26.5
2725 Female, age 75, unknown 25.9
1954 Female, age 42, unknown 24.9
Substantia nigra
nTPM: 26.9
2583 Male, age 75, right hemisphere 30.2
2590 Female, age 75, unknown 27.5
1916 Female, age 42, unknown 27.3
1941 Male, age 53, unknown 27.0
2409 Female, age 72, unknown 26.8
2665 Male, age 74, both hemispheres 26.8
1889 Female, age 72, unknown 26.6
2699 Male, age 18, unknown 26.1
2241 Male, age 72, unknown 25.7
1851 Male, age 51, unknown 25.5
Superior colliculus
nTPM: 28.8
1796 Male, age 53, unknown 30.8
2087 Female, age 72, unknown 30.2
1913 Female, age 42, unknown 29.8
2664 Male, age 75, both hemispheres 29.8
2261 Male, age 18, unknown 29.6
2668 Female, age 75, unknown 28.5
1995 Male, age 72, unknown 27.9
1839 Male, age 51, unknown 27.4
1895 Male, age 76, right hemisphere 27.2
2587 Male, age 74, left hemisphere 26.3
Ventral tegmental area
nTPM: 26.3
2218 Male, age 76, both hemispheres 27.9
2410 Female, age 72, unknown 27.1
1915 Female, age 42, unknown 26.8
1942 Male, age 51, unknown 26.1
2223 Female, age 72, unknown 25.2
2021 Male, age 53, unknown 25.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.1
Samples: 183

Max nTPM: 16.1
Min nTPM: 2.4
Std nTPM: 1.5
Median nTPM: 4.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 16.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 12.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 11.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 8.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 8.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 8.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 7.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 7.5
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 7.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.5
FF:10158-103A5 76 years, female 55.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.8
Samples: 4

Max nTPM: 20.9
Min nTPM: 16.8
Sample A Female 19.5
Sample B Female 16.8
Sample C Male 20.9
Sample D Male 17.8
Midbrain
nTPM: 18.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 16.6
Sample C Male 20.4
Sample D Male 18.6
Periaqueductal gray
nTPM: 16.4
Samples: 3

Max nTPM: 17.0
Min nTPM: 15.7
Sample B Female 16.6
Sample C Male 17.0
Sample D Male 15.7
Superior colliculi
nTPM: 19.2
Samples: 4

Max nTPM: 19.9
Min nTPM: 18.1
Sample A Female 18.1
Sample B Female 19.0
Sample C Male 19.9
Sample D Male 19.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.7
Samples: 4

Max nTPM: 19.8
Min nTPM: 19.2
Sample A Male 19.8
Sample B Male 19.8
Sample C Female 19.8
Sample D Female 19.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70528575 Antisense, RP_050623_02_H05, Mouse strain C57BL/6J (56 days, male) 0.5

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