MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.4 nTPM
HPA Brain:58.4 nTPM
GTEx:12.4 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:56.2 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.0
1827 Male, age 72, unknown 37.8
2411 Female, age 72, unknown 36.4
1833 Male, age 53, unknown 34.4
1870 Female, age 42, unknown 32.7
1830 Male, age 51, unknown 30.7
2666 Male, age 74, left hemisphere 30.0
2219 Male, age 76, both hemispheres 29.0
2586 Male, age 75, left hemisphere 28.4
2828 Female, age 72, unknown 25.7
2019 Male, age 18, unknown 25.0
Dorsal raphe nucleus
nTPM: 37.9
2298 Female, age 72, unknown 45.7
2047 Male, age 72, unknown 44.7
2750 Male, age 76, both hemispheres 38.3
1828 Male, age 53, unknown 33.5
2016 Female, age 72, unknown 27.2
Inferior colliculus
nTPM: 50.7
2849 Male, age 72, unknown 58.7
2097 Female, age 72, unknown 55.8
1848 Female, age 42, unknown 54.4
1890 Male, age 53, unknown 33.7
Median raphe nucleus
nTPM: 58.4
2220 Male, age 76, midline 58.4
Periaquaductal grey, anterior
nTPM: 45.0
2502 Female, age 75, unknown 66.7
1795 Male, age 51, unknown 35.3
1947 Male, age 18, unknown 32.8
Periaquaductal grey, dorsal
nTPM: 40.7
1840 Male, age 53, unknown 46.5
2464 Female, age 72, unknown 44.3
2850 Male, age 76, both hemispheres 40.8
1831 Male, age 72, unknown 31.2
Periaquaductal grey, lateral
nTPM: 34.1
2140 Male, age 76, both hemispheres 42.1
2053 Male, age 18, unknown 36.5
2272 Male, age 74, both hemispheres 23.7
Pretectal area
nTPM: 35.8
2825 Male, age 18, unknown 46.0
2224 Female, age 72, unknown 42.1
2007 Male, age 72, unknown 41.1
2316 Male, age 76, right hemisphere 40.2
1816 Male, age 51, unknown 39.5
1817 Female, age 42, unknown 36.3
2407 Male, age 75, both hemispheres 36.2
2667 Female, age 75, unknown 31.7
1944 Female, age 72, unknown 31.0
1815 Male, age 53, unknown 29.5
2273 Male, age 74, both hemispheres 20.0
Red nucleus
nTPM: 21.8
2584 Male, age 75, left hemisphere 35.8
2785 Male, age 18, unknown 29.4
2769 Male, age 72, unknown 24.9
2227 Male, age 72, unknown 24.3
1954 Female, age 42, unknown 23.3
1821 Female, age 72, unknown 21.2
2823 Male, age 76, right hemisphere 21.2
2503 Female, age 72, unknown 19.5
2588 Male, age 74, left hemisphere 17.7
1865 Male, age 51, unknown 16.1
1904 Male, age 53, unknown 15.7
2725 Female, age 75, unknown 12.7
Substantia nigra
nTPM: 19.8
1889 Female, age 72, unknown 33.3
1941 Male, age 53, unknown 31.5
2665 Male, age 74, both hemispheres 21.2
2241 Male, age 72, unknown 20.1
2590 Female, age 75, unknown 18.5
1851 Male, age 51, unknown 16.6
1916 Female, age 42, unknown 16.0
2409 Female, age 72, unknown 15.5
2699 Male, age 18, unknown 13.5
2583 Male, age 75, right hemisphere 11.3
Superior colliculus
nTPM: 35.3
1895 Male, age 76, right hemisphere 55.3
2664 Male, age 75, both hemispheres 50.3
1839 Male, age 51, unknown 44.0
2668 Female, age 75, unknown 37.8
1796 Male, age 53, unknown 37.6
2261 Male, age 18, unknown 35.3
2087 Female, age 72, unknown 32.1
2587 Male, age 74, left hemisphere 31.8
1913 Female, age 42, unknown 14.8
1995 Male, age 72, unknown 13.8
Ventral tegmental area
nTPM: 28.3
1942 Male, age 51, unknown 32.4
2223 Female, age 72, unknown 30.8
2218 Male, age 76, both hemispheres 30.7
2021 Male, age 53, unknown 29.0
1915 Female, age 42, unknown 25.6
2410 Female, age 72, unknown 21.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.4
Samples: 183

Max nTPM: 337.1
Min nTPM: 0.1
Std nTPM: 30.8
Median nTPM: 7.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 337.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 243.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 64.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 29.1
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 27.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 27.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 25.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 25.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 24.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 24.8
Min nTPM: 6.5
Sample A Female 24.5
Sample B Female 11.6
Sample C Male 24.8
Sample D Male 6.5
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 37.5
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 18.2
Sample C Male 21.1
Sample D Male 37.5
Periaqueductal gray
nTPM: 22.8
Samples: 3

Max nTPM: 28.3
Min nTPM: 19.7
Sample B Female 20.3
Sample C Male 28.3
Sample D Male 19.7
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 31.5
Min nTPM: 7.9
Sample A Female 31.5
Sample B Female 8.8
Sample C Male 7.9
Sample D Male 24.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 56.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.2
Samples: 4

Max nTPM: 59.8
Min nTPM: 53.7
Sample A Male 59.8
Sample B Male 55.4
Sample C Female 53.7
Sample D Female 55.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
71378389 Antisense, RP_050510_03_F03, Mouse strain C57BL/6J (56 days, male) 10.4
74743293 Antisense, RP_060220_04_E11, Mouse strain C57BL/6J (56 days, male) 6.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo