MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:53.1 nTPM
GTEx:16.1 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:33.6 nTPM
Allen mouse:8.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.7
2586 Male, age 75, left hemisphere 65.6
2828 Female, age 72, unknown 63.0
2666 Male, age 74, left hemisphere 57.5
1833 Male, age 53, unknown 49.6
1827 Male, age 72, unknown 49.4
2219 Male, age 76, both hemispheres 46.5
1870 Female, age 42, unknown 45.9
1830 Male, age 51, unknown 45.4
2411 Female, age 72, unknown 41.0
2019 Male, age 18, unknown 33.7
Dorsal raphe nucleus
nTPM: 38.9
2047 Male, age 72, unknown 42.8
1828 Male, age 53, unknown 41.4
2016 Female, age 72, unknown 41.1
2750 Male, age 76, both hemispheres 35.4
2298 Female, age 72, unknown 33.9
Inferior colliculus
nTPM: 51.3
2849 Male, age 72, unknown 61.7
1848 Female, age 42, unknown 59.4
1890 Male, age 53, unknown 43.7
2097 Female, age 72, unknown 40.4
Median raphe nucleus
nTPM: 30.4
2220 Male, age 76, midline 30.4
Periaquaductal grey, anterior
nTPM: 48.4
1947 Male, age 18, unknown 56.4
2502 Female, age 75, unknown 47.2
1795 Male, age 51, unknown 41.7
Periaquaductal grey, dorsal
nTPM: 46.3
1840 Male, age 53, unknown 56.5
2464 Female, age 72, unknown 50.4
2850 Male, age 76, both hemispheres 41.0
1831 Male, age 72, unknown 37.2
Periaquaductal grey, lateral
nTPM: 41.3
2053 Male, age 18, unknown 47.4
2140 Male, age 76, both hemispheres 45.1
2272 Male, age 74, both hemispheres 31.3
Pretectal area
nTPM: 42.6
2825 Male, age 18, unknown 56.2
2316 Male, age 76, right hemisphere 51.9
2407 Male, age 75, both hemispheres 49.6
1815 Male, age 53, unknown 46.2
2667 Female, age 75, unknown 43.5
1817 Female, age 42, unknown 41.6
1816 Male, age 51, unknown 41.0
1944 Female, age 72, unknown 37.7
2224 Female, age 72, unknown 37.1
2007 Male, age 72, unknown 34.7
2273 Male, age 74, both hemispheres 28.9
Red nucleus
nTPM: 53.1
2588 Male, age 74, left hemisphere 71.2
2503 Female, age 72, unknown 59.7
1954 Female, age 42, unknown 59.6
2769 Male, age 72, unknown 59.5
2227 Male, age 72, unknown 56.8
1904 Male, age 53, unknown 56.1
1865 Male, age 51, unknown 51.9
2725 Female, age 75, unknown 50.1
1821 Female, age 72, unknown 47.1
2823 Male, age 76, right hemisphere 46.9
2584 Male, age 75, left hemisphere 45.0
2785 Male, age 18, unknown 33.6
Substantia nigra
nTPM: 37.6
2699 Male, age 18, unknown 45.4
2665 Male, age 74, both hemispheres 41.5
1916 Female, age 42, unknown 41.0
2583 Male, age 75, right hemisphere 39.7
1889 Female, age 72, unknown 39.0
2241 Male, age 72, unknown 37.6
2590 Female, age 75, unknown 37.6
1851 Male, age 51, unknown 36.1
1941 Male, age 53, unknown 29.8
2409 Female, age 72, unknown 27.9
Superior colliculus
nTPM: 47.6
1895 Male, age 76, right hemisphere 65.5
2664 Male, age 75, both hemispheres 59.6
1839 Male, age 51, unknown 52.3
2668 Female, age 75, unknown 47.3
2261 Male, age 18, unknown 47.0
1796 Male, age 53, unknown 45.4
2587 Male, age 74, left hemisphere 44.0
2087 Female, age 72, unknown 41.1
1995 Male, age 72, unknown 40.5
1913 Female, age 42, unknown 32.8
Ventral tegmental area
nTPM: 33.0
2410 Female, age 72, unknown 42.5
1942 Male, age 51, unknown 38.1
1915 Female, age 42, unknown 34.8
2021 Male, age 53, unknown 30.2
2218 Male, age 76, both hemispheres 28.5
2223 Female, age 72, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 183

Max nTPM: 50.0
Min nTPM: 0.5
Std nTPM: 7.3
Median nTPM: 16.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 50.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 34.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 32.2
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 31.4
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 30.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 30.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 30.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 29.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 28.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 28.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 28.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.1
Samples: 4

Max nTPM: 26.0
Min nTPM: 12.5
Sample A Female 21.3
Sample B Female 12.7
Sample C Male 26.0
Sample D Male 12.5
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 31.4
Min nTPM: 12.3
Sample A Female 12.3
Sample B Female 14.4
Sample C Male 16.9
Sample D Male 31.4
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 21.5
Min nTPM: 14.1
Sample B Female 14.1
Sample C Male 21.5
Sample D Male 15.1
Superior colliculi
nTPM: 16.3
Samples: 4

Max nTPM: 23.8
Min nTPM: 5.3
Sample A Female 23.8
Sample B Female 5.3
Sample C Male 14.7
Sample D Male 21.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 35.0
Min nTPM: 30.6
Sample A Male 30.6
Sample B Male 33.7
Sample C Female 34.9
Sample D Female 35.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
71654154 Antisense, RP_050927_03_D10, Mouse strain C57BL/6J (56 days, male) 8.8

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