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ATP5F1B
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  • ATP5F1B
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:205.7 nTPM
HPA Brain:311.0 nTPM
GTEx:205.7 nTPM
FANTOM5:218.5 Scaled Tags Per Million
Pig:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 271.3
1981 Female, age 72, midline 351.9
2194 Female, age 79, both hemispheres 288.9
2565 Male, age 75, midline 270.3
2048 Male, age 55, midline 237.6
2816 Male, age 47, midline 207.9
Cervical spinal cord, dorsal horn
nTPM: 311.0
2173 Female, age 72, unknown 410.4
2069 Male, age 47, both hemispheres 353.0
2297 Male, age 75, both hemispheres 317.8
2296 Male, age 66, both hemispheres 316.4
1877 Male, age 55, unknown 237.1
2721 Male, age 90, both hemispheres 231.6
Cervical spinal cord, ventral horn
nTPM: 287.2
2068 Male, age 55, unknown 323.0
2098 Female, age 72, unknown 316.6
2809 Male, age 90, both hemispheres 301.6
2480 Male, age 75, both hemispheres 298.9
2295 Male, age 66, both hemispheres 243.0
2820 Female, age 79, both hemispheres 239.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 205.7
Samples: 204

Max nTPM: 411.0
Min nTPM: 114.2
Std nTPM: 40.3
Median nTPM: 199.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 411.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 353.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 333.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 318.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 299.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 295.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 295.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 289.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 288.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 280.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 280.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 271.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 269.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 265.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 259.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 259.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 258.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 258.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 256.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 253.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 251.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 251.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 249.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 248.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 247.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 246.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 244.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 243.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 243.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 243.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 243.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 240.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 238.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 236.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 235.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 235.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 235.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 232.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 231.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 230.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 230.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 229.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 229.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 228.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 228.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 228.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 228.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 227.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 227.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 227.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 227.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 224.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 224.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 221.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 221.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 219.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 219.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 218.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 218.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 218.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 218.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 218.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 217.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 217.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 216.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 216.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 216.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 215.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 215.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 215.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 214.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 213.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 213.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 213.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 213.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 211.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 211.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 210.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 210.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 209.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 209.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 208.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 208.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 207.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 207.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 206.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 206.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 206.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 205.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 205.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 204.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 204.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 204.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 204.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 203.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 202.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 202.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 201.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 200.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 200.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 200.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 199.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 199.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 199.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 199.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 199.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 197.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 197.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 197.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 197.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 196.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 196.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 196.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 195.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 195.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 194.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 194.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 194.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 193.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 193.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 193.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 193.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 193.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 192.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 192.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 192.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 192.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 191.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 191.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 191.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 190.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 190.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 190.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 189.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 189.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 189.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 189.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 189.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 188.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 188.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 187.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 187.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 187.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 187.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 187.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 187.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 187.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 187.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 186.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 186.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 185.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 185.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 185.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 184.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 182.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 182.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 182.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 182.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 181.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 180.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 179.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 179.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 179.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 179.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 177.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 176.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 176.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 175.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 175.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 175.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 174.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 174.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 171.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 170.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 170.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 170.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 168.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 167.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 165.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 163.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 163.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 162.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 161.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 160.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 156.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 156.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 155.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 155.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 152.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 150.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 149.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 148.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 148.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 145.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 141.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 141.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 138.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 136.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 136.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 134.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 133.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 132.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 131.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 114.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

218.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 218.5
FF:10181-103D1 60 years, female 235.0
FF:10159-103A6 76 years, female 202.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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