MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.4 nTPM
HPA Brain:97.8 nTPM
GTEx:57.4 nTPM
FANTOM5:60.2 Scaled Tags Per Million
Pig:30.6 nTPM
Mouse:8.0 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 97.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.1
2586 Male, age 75, left hemisphere 113.1
2666 Male, age 74, left hemisphere 96.3
2828 Female, age 72, unknown 90.3
1830 Male, age 51, unknown 85.0
1833 Male, age 53, unknown 81.4
2019 Male, age 18, unknown 72.8
1870 Female, age 42, unknown 69.5
2411 Female, age 72, unknown 67.2
2219 Male, age 76, both hemispheres 58.4
1827 Male, age 72, unknown 57.2
Dorsal raphe nucleus
nTPM: 58.6
2750 Male, age 76, both hemispheres 70.2
2016 Female, age 72, unknown 68.4
1828 Male, age 53, unknown 62.0
2047 Male, age 72, unknown 52.9
2298 Female, age 72, unknown 39.5
Inferior colliculus
nTPM: 57.8
2849 Male, age 72, unknown 66.4
1890 Male, age 53, unknown 64.4
1848 Female, age 42, unknown 58.0
2097 Female, age 72, unknown 42.6
Median raphe nucleus
nTPM: 48.6
2220 Male, age 76, midline 48.6
Periaquaductal grey, anterior
nTPM: 59.8
2502 Female, age 75, unknown 67.3
1795 Male, age 51, unknown 56.2
1947 Male, age 18, unknown 56.0
Periaquaductal grey, dorsal
nTPM: 54.2
2464 Female, age 72, unknown 62.6
1831 Male, age 72, unknown 58.4
2850 Male, age 76, both hemispheres 50.1
1840 Male, age 53, unknown 45.9
Periaquaductal grey, lateral
nTPM: 53.6
2053 Male, age 18, unknown 57.0
2140 Male, age 76, both hemispheres 54.8
2272 Male, age 74, both hemispheres 48.9
Pretectal area
nTPM: 56.0
2316 Male, age 76, right hemisphere 69.8
1815 Male, age 53, unknown 69.1
2407 Male, age 75, both hemispheres 66.0
2825 Male, age 18, unknown 63.6
1817 Female, age 42, unknown 63.4
2667 Female, age 75, unknown 57.6
2007 Male, age 72, unknown 55.4
1944 Female, age 72, unknown 46.6
2224 Female, age 72, unknown 44.4
1816 Male, age 51, unknown 43.3
2273 Male, age 74, both hemispheres 37.2
Red nucleus
nTPM: 97.8
2588 Male, age 74, left hemisphere 129.3
2769 Male, age 72, unknown 112.8
2227 Male, age 72, unknown 105.4
2823 Male, age 76, right hemisphere 104.2
1904 Male, age 53, unknown 98.6
2503 Female, age 72, unknown 98.6
1865 Male, age 51, unknown 98.4
2584 Male, age 75, left hemisphere 96.3
1954 Female, age 42, unknown 86.2
1821 Female, age 72, unknown 85.9
2785 Male, age 18, unknown 81.5
2725 Female, age 75, unknown 76.8
Substantia nigra
nTPM: 68.2
2665 Male, age 74, both hemispheres 100.4
2699 Male, age 18, unknown 90.5
1851 Male, age 51, unknown 75.2
2583 Male, age 75, right hemisphere 70.5
2590 Female, age 75, unknown 67.6
1889 Female, age 72, unknown 58.5
2409 Female, age 72, unknown 58.1
1916 Female, age 42, unknown 54.7
1941 Male, age 53, unknown 53.1
2241 Male, age 72, unknown 53.1
Superior colliculus
nTPM: 67.1
1913 Female, age 42, unknown 79.9
2664 Male, age 75, both hemispheres 79.3
1995 Male, age 72, unknown 75.9
2668 Female, age 75, unknown 69.9
1839 Male, age 51, unknown 68.5
2587 Male, age 74, left hemisphere 66.9
1895 Male, age 76, right hemisphere 64.9
1796 Male, age 53, unknown 58.1
2087 Female, age 72, unknown 54.7
2261 Male, age 18, unknown 53.3
Ventral tegmental area
nTPM: 63.2
2223 Female, age 72, unknown 66.7
2410 Female, age 72, unknown 65.6
1942 Male, age 51, unknown 65.4
2021 Male, age 53, unknown 64.7
1915 Female, age 42, unknown 60.6
2218 Male, age 76, both hemispheres 56.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.4
Samples: 183

Max nTPM: 195.7
Min nTPM: 14.6
Std nTPM: 25.0
Median nTPM: 53.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 195.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 128.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 128.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 116.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 116.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 114.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 113.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 105.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 104.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 103.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 101.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.2
FF:10158-103A5 76 years, female 60.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.5
Samples: 4

Max nTPM: 36.5
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 32.6
Sample C Male 24.7
Sample D Male 36.5
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 26.5
Min nTPM: 20.7
Sample A Female 26.5
Sample B Female 20.7
Sample C Male 22.1
Sample D Male 20.7
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 15.6
Min nTPM: 14.7
Sample B Female 15.6
Sample C Male 14.7
Sample D Male 15.5
Superior colliculi
nTPM: 30.6
Samples: 4

Max nTPM: 41.6
Min nTPM: 24.7
Sample A Female 27.9
Sample B Female 41.6
Sample C Male 24.7
Sample D Male 28.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.6
Sample A Male 8.6
Sample B Male 8.5
Sample C Female 6.6
Sample D Female 8.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
68845711 Antisense, RP_050224_02_D03, Mouse strain C57BL/6J (56 days, male) 1.5

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