MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.2 nTPM
HPA Brain:59.9 nTPM
GTEx:44.2 nTPM
FANTOM5:150.7 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:93.8 nTPM
Allen mouse:6.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.9
1870 Female, age 42, unknown 62.0
1833 Male, age 53, unknown 60.5
1830 Male, age 51, unknown 57.3
2666 Male, age 74, left hemisphere 52.9
2828 Female, age 72, unknown 52.7
1827 Male, age 72, unknown 51.7
2219 Male, age 76, both hemispheres 51.0
2019 Male, age 18, unknown 48.6
2411 Female, age 72, unknown 48.0
2586 Male, age 75, left hemisphere 44.1
Dorsal raphe nucleus
nTPM: 51.2
2016 Female, age 72, unknown 55.8
2750 Male, age 76, both hemispheres 55.7
1828 Male, age 53, unknown 53.0
2047 Male, age 72, unknown 51.0
2298 Female, age 72, unknown 40.5
Inferior colliculus
nTPM: 53.2
2849 Male, age 72, unknown 61.1
1848 Female, age 42, unknown 53.6
1890 Male, age 53, unknown 51.0
2097 Female, age 72, unknown 47.0
Median raphe nucleus
nTPM: 59.9
2220 Male, age 76, midline 59.9
Periaquaductal grey, anterior
nTPM: 46.5
1947 Male, age 18, unknown 50.1
2502 Female, age 75, unknown 44.8
1795 Male, age 51, unknown 44.6
Periaquaductal grey, dorsal
nTPM: 54.4
2850 Male, age 76, both hemispheres 68.0
1840 Male, age 53, unknown 51.8
1831 Male, age 72, unknown 51.1
2464 Female, age 72, unknown 46.5
Periaquaductal grey, lateral
nTPM: 50.8
2140 Male, age 76, both hemispheres 56.1
2053 Male, age 18, unknown 50.6
2272 Male, age 74, both hemispheres 45.6
Pretectal area
nTPM: 50.7
2407 Male, age 75, both hemispheres 56.7
1817 Female, age 42, unknown 54.6
2224 Female, age 72, unknown 54.3
2316 Male, age 76, right hemisphere 54.2
1815 Male, age 53, unknown 54.0
2825 Male, age 18, unknown 52.6
1944 Female, age 72, unknown 48.7
2007 Male, age 72, unknown 48.3
2667 Female, age 75, unknown 47.2
2273 Male, age 74, both hemispheres 45.2
1816 Male, age 51, unknown 42.4
Red nucleus
nTPM: 59.2
2725 Female, age 75, unknown 71.4
2503 Female, age 72, unknown 67.0
1821 Female, age 72, unknown 62.8
2823 Male, age 76, right hemisphere 61.9
1954 Female, age 42, unknown 61.6
1865 Male, age 51, unknown 61.5
1904 Male, age 53, unknown 57.2
2227 Male, age 72, unknown 56.8
2769 Male, age 72, unknown 55.7
2584 Male, age 75, left hemisphere 52.2
2588 Male, age 74, left hemisphere 52.2
2785 Male, age 18, unknown 50.0
Substantia nigra
nTPM: 52.8
2699 Male, age 18, unknown 68.3
2665 Male, age 74, both hemispheres 59.1
1941 Male, age 53, unknown 51.5
2590 Female, age 75, unknown 51.4
1889 Female, age 72, unknown 51.1
1851 Male, age 51, unknown 50.9
2409 Female, age 72, unknown 50.8
1916 Female, age 42, unknown 49.5
2241 Male, age 72, unknown 48.2
2583 Male, age 75, right hemisphere 46.9
Superior colliculus
nTPM: 51.4
1913 Female, age 42, unknown 64.8
1995 Male, age 72, unknown 58.9
1839 Male, age 51, unknown 57.6
2587 Male, age 74, left hemisphere 54.6
1895 Male, age 76, right hemisphere 54.2
2668 Female, age 75, unknown 47.6
1796 Male, age 53, unknown 45.7
2087 Female, age 72, unknown 45.2
2261 Male, age 18, unknown 44.3
2664 Male, age 75, both hemispheres 41.2
Ventral tegmental area
nTPM: 52.4
2223 Female, age 72, unknown 61.7
2218 Male, age 76, both hemispheres 56.8
1942 Male, age 51, unknown 51.6
1915 Female, age 42, unknown 51.1
2021 Male, age 53, unknown 51.1
2410 Female, age 72, unknown 41.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.2
Samples: 183

Max nTPM: 70.9
Min nTPM: 28.8
Std nTPM: 8.4
Median nTPM: 43.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 68.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 66.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 63.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 63.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 62.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 61.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 61.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 60.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 59.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 59.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 150.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 150.7
FF:10158-103A5 76 years, female 150.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 40.8
Min nTPM: 30.8
Sample A Female 40.8
Sample B Female 31.2
Sample C Male 34.9
Sample D Male 30.8
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 43.0
Min nTPM: 29.3
Sample A Female 43.0
Sample B Female 34.9
Sample C Male 33.5
Sample D Male 29.3
Periaqueductal gray
nTPM: 30.0
Samples: 3

Max nTPM: 32.4
Min nTPM: 27.9
Sample B Female 29.8
Sample C Male 32.4
Sample D Male 27.9
Superior colliculi
nTPM: 32.2
Samples: 4

Max nTPM: 34.7
Min nTPM: 27.1
Sample A Female 34.7
Sample B Female 27.1
Sample C Male 34.4
Sample D Male 32.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 93.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.9
Samples: 4

Max nTPM: 96.9
Min nTPM: 87.1
Sample A Male 87.1
Sample B Male 95.8
Sample C Female 96.9
Sample D Female 95.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
532616 Antisense, RP_040810_02_F02, Mouse strain C57BL/6J (56 days, male) 6.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo