MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.6 nTPM
HPA Brain:37.4 nTPM
GTEx:56.6 nTPM
FANTOM5:170.7 Scaled Tags Per Million
Pig:36.3 nTPM
Mouse:15.4 nTPM
Allen mouse:9.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.1
1830 Male, age 51, unknown 31.6
2828 Female, age 72, unknown 28.4
1870 Female, age 42, unknown 28.1
2666 Male, age 74, left hemisphere 28.0
1833 Male, age 53, unknown 27.0
2019 Male, age 18, unknown 24.8
2411 Female, age 72, unknown 23.2
2219 Male, age 76, both hemispheres 22.4
1827 Male, age 72, unknown 19.3
2586 Male, age 75, left hemisphere 8.6
Dorsal raphe nucleus
nTPM: 31.9
2298 Female, age 72, unknown 40.2
2750 Male, age 76, both hemispheres 33.7
2016 Female, age 72, unknown 33.6
1828 Male, age 53, unknown 29.6
2047 Male, age 72, unknown 22.3
Inferior colliculus
nTPM: 26.7
2849 Male, age 72, unknown 30.1
2097 Female, age 72, unknown 29.9
1890 Male, age 53, unknown 26.0
1848 Female, age 42, unknown 20.7
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Periaquaductal grey, anterior
nTPM: 20.0
2502 Female, age 75, unknown 21.9
1795 Male, age 51, unknown 19.3
1947 Male, age 18, unknown 18.9
Periaquaductal grey, dorsal
nTPM: 30.5
2850 Male, age 76, both hemispheres 36.9
1831 Male, age 72, unknown 35.1
1840 Male, age 53, unknown 25.4
2464 Female, age 72, unknown 24.4
Periaquaductal grey, lateral
nTPM: 32.5
2272 Male, age 74, both hemispheres 37.0
2140 Male, age 76, both hemispheres 31.1
2053 Male, age 18, unknown 29.4
Pretectal area
nTPM: 25.5
2316 Male, age 76, right hemisphere 35.0
2273 Male, age 74, both hemispheres 32.0
1815 Male, age 53, unknown 28.4
1817 Female, age 42, unknown 28.2
2224 Female, age 72, unknown 28.0
2407 Male, age 75, both hemispheres 24.7
1944 Female, age 72, unknown 23.8
2825 Male, age 18, unknown 23.3
2007 Male, age 72, unknown 21.7
2667 Female, age 75, unknown 19.7
1816 Male, age 51, unknown 16.1
Red nucleus
nTPM: 29.2
1865 Male, age 51, unknown 37.3
1904 Male, age 53, unknown 34.6
2503 Female, age 72, unknown 34.1
2823 Male, age 76, right hemisphere 31.6
1954 Female, age 42, unknown 30.9
2725 Female, age 75, unknown 30.0
1821 Female, age 72, unknown 29.9
2769 Male, age 72, unknown 29.5
2227 Male, age 72, unknown 29.1
2785 Male, age 18, unknown 25.7
2588 Male, age 74, left hemisphere 20.2
2584 Male, age 75, left hemisphere 17.9
Substantia nigra
nTPM: 37.4
2699 Male, age 18, unknown 62.3
2665 Male, age 74, both hemispheres 54.1
2590 Female, age 75, unknown 42.1
1916 Female, age 42, unknown 36.7
2241 Male, age 72, unknown 36.6
1851 Male, age 51, unknown 34.9
2409 Female, age 72, unknown 34.3
1941 Male, age 53, unknown 27.6
2583 Male, age 75, right hemisphere 24.9
1889 Female, age 72, unknown 21.0
Superior colliculus
nTPM: 26.2
2587 Male, age 74, left hemisphere 39.8
1913 Female, age 42, unknown 39.4
1995 Male, age 72, unknown 33.6
1839 Male, age 51, unknown 27.7
2668 Female, age 75, unknown 23.3
2087 Female, age 72, unknown 23.0
1796 Male, age 53, unknown 21.7
1895 Male, age 76, right hemisphere 21.5
2261 Male, age 18, unknown 18.2
2664 Male, age 75, both hemispheres 13.5
Ventral tegmental area
nTPM: 33.1
2021 Male, age 53, unknown 38.6
2218 Male, age 76, both hemispheres 36.5
1915 Female, age 42, unknown 34.3
2410 Female, age 72, unknown 33.8
2223 Female, age 72, unknown 28.5
1942 Male, age 51, unknown 27.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.6
Samples: 183

Max nTPM: 185.6
Min nTPM: 10.5
Std nTPM: 30.5
Median nTPM: 48.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 185.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 183.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 182.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 174.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 159.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 119.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 118.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 116.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 115.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 113.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 105.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 170.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 170.7
FF:10158-103A5 76 years, female 170.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.8
Samples: 4

Max nTPM: 37.1
Min nTPM: 33.4
Sample A Female 33.4
Sample B Female 37.1
Sample C Male 34.4
Sample D Male 34.2
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 45.9
Min nTPM: 14.0
Sample A Female 45.9
Sample B Female 37.0
Sample C Male 14.0
Sample D Male 15.9
Periaqueductal gray
nTPM: 36.2
Samples: 3

Max nTPM: 46.6
Min nTPM: 30.8
Sample B Female 30.8
Sample C Male 46.6
Sample D Male 31.3
Superior colliculi
nTPM: 27.7
Samples: 4

Max nTPM: 32.1
Min nTPM: 20.1
Sample A Female 30.6
Sample B Female 32.1
Sample C Male 20.1
Sample D Male 27.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 18.1
Min nTPM: 13.9
Sample A Male 18.1
Sample B Male 15.2
Sample C Female 14.1
Sample D Female 13.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
68443369 Antisense, RP_050111_01_H03, Mouse strain C57BL/6J (56 days, male) 9.8

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