HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:2630.8 nTPM
HPA Brain:1821.0 nTPM
GTEx:2630.8 nTPM
FANTOM5:1506.7 Scaled Tags Per Million
Pig:2463.3 nTPM
Mouse:3226.4 nTPM
Allen mouse:32.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040067Antibody HPA061280Antibody CAB005197Antibody CAB016392Antibody CAB079968
Glial cells Not detectedLowLowMediumNot detected
Neuronal cells MediumLowMediumMediumNot detected










HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 1821.0
Sample id Sample description nTPM
Hippocampus
nTPM: 1672.1
1898 Male, age 80, left hemisphere 2092.4
1855 Male, age 76, left hemisphere 1757.7
2621 Female, age 67, right hemisphere 1678.9
2529 Female, age 94, left hemisphere 1641.5
2148 Female, age 91, left hemisphere 1456.8
1911 Female, age 85, right hemisphere 1405.1
Dentate gyrus
nTPM: 1614.5
2010 Male, age 76, both hemispheres 2190.3
2530 Female, age 94, left hemisphere 1720.8
1927 Female, age 91, both hemispheres 1576.0
2528 Male, age 74, both hemispheres 1536.9
2246 Female, age 85, both hemispheres 1497.3
2531 Female, age 67, both hemispheres 1165.8
Entorhinal gyrus
nTPM: 1497.1
2764 Male, age 80, right hemisphere 1805.0
1938 Female, age 85, left hemisphere 1610.8
1787 Male, age 76, left hemisphere 1478.3
2117 Female, age 91, right hemisphere 1474.6
2686 Male, age 75, right hemisphere 1366.6
2613 Female, age 94, left hemisphere 1247.4
Hippocampus, CA1
nTPM: 1821.0
2749 Male, age 80, left hemisphere 2393.1
2527 Male, age 74, both hemispheres 1941.5
2045 Male, age 76, both hemispheres 1828.5
1873 Female, age 85, both hemispheres 1541.9
2082 Female, age 91, right hemisphere 1400.2
Hippocampus, CA2
nTPM: 1656.0
2249 Male, age 74, both hemispheres 1928.8
1892 Male, age 76, both hemispheres 1867.7
1963 Male, age 80, left hemisphere 1792.3
2437 Female, age 94, left hemisphere 1578.8
1940 Female, age 85, left hemisphere 1390.6
2113 Female, age 91, right hemisphere 1377.9
Hippocampus, CA3
nTPM: 1615.3
2436 Male, age 74, both hemispheres 1983.1
1867 Male, age 76, both hemispheres 1897.0
2137 Male, age 80, left hemisphere 1764.5
1891 Female, age 85, both hemispheres 1406.9
2861 Female, age 67, both hemispheres 1322.7
2620 Female, age 94, left hemisphere 1317.8
Parahippocampal cortex
nTPM: 1565.3
2018 Male, age 76, both hemispheres 1903.7
1850 Male, age 80, both hemispheres 1736.6
2245 Female, age 91, both hemispheres 1724.8
2250 Female, age 67, right hemisphere 1692.3
1933 Female, age 85, both hemispheres 1573.1
2532 Female, age 72, left hemisphere 1558.0
1990 Female, age 91, right hemisphere 1545.9
2692 Male, age 74, both hemispheres 1371.9
2693 Female, age 94, both hemispheres 1279.4
2622 Female, age 67, right hemisphere 1267.5
Perirhinal gyrus
nTPM: 1735.2
1847 Female, age 91, left hemisphere 2091.5
1794 Male, age 80, right hemisphere 1900.4
2521 Female, age 94, right hemisphere 1738.8
1841 Female, age 85, right hemisphere 1716.3
2848 Male, age 76, right hemisphere 1229.0
Subiculum
nTPM: 1564.7
1901 Male, age 80, both hemispheres 1716.1
2619 Male, age 74, both hemispheres 1613.9
1977 Female, age 85, both hemispheres 1609.6
2438 Female, age 94, left hemisphere 1607.9
2042 Male, age 76, both hemispheres 1558.8
2729 Female, age 91, right hemisphere 1281.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 2630.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 2630.8
Samples: 255

Max nTPM: 4593.4
Min nTPM: 1349.5
Std nTPM: 575.6
Median nTPM: 2581.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 4593.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 4577.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 4253.8
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 4234.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 4229.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 3979.1
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 3938.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 3930.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 3926.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 3756.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 3711.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1506.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1506.7
FF:10169-103B7 60 years, female 2024.1
FF:10153-102I9 76 years, female 989.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 2463.3
Pig sample Sample description nTPM
Subiculum
nTPM: 1980.2
Samples: 4

Max nTPM: 2538.2
Min nTPM: 1701.5
Sample A Female 2538.2
Sample B Female 1899.5
Sample C Male 1781.6
Sample D Male 1701.5
Dorsal hippocampus
nTPM: 2463.3
Samples: 4

Max nTPM: 3429.5
Min nTPM: 1732.1
Sample A Female 3429.5
Sample B Female 2427.4
Sample C Male 2264.2
Sample D Male 1732.1
Entorhinal cortex
nTPM: 2150.4
Samples: 4

Max nTPM: 2442.5
Min nTPM: 1732.4
Sample A Female 2377.1
Sample B Female 2442.5
Sample C Male 2049.7
Sample D Male 1732.4
Ventral hippocampus
nTPM: 2268.2
Samples: 4

Max nTPM: 2676.5
Min nTPM: 1583.3
Sample A Female 2520.9
Sample B Female 1583.3
Sample C Male 2676.5
Sample D Male 2292.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 3226.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3120.9
Samples: 4

Max nTPM: 3618.3
Min nTPM: 2839.3
Sample A Male 2854.4
Sample B Male 2839.3
Sample C Female 3171.7
Sample D Female 3618.3
Hippocampal formation
nTPM: 3226.4
Samples: 4

Max nTPM: 3525.6
Min nTPM: 3006.8
Sample A Male 3236.7
Sample B Male 3006.8
Sample C Female 3525.6
Sample D Female 3136.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 32.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 32.1
70276861 Antisense, RP_050531_01_D11, Mouse strain C57BL/6J (56 days, male) 32.1

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