We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GAPDH
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • GAPDH
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2757.7 nTPM
HPA Brain:1953.0 nTPM
GTEx:2757.7 nTPM
FANTOM5:1505.4 Scaled Tags Per Million
Pig:2233.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1953.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1848.0
1981 Female, age 72, midline 2303.9
2565 Male, age 75, midline 1949.0
2194 Female, age 79, both hemispheres 1853.0
2048 Male, age 55, midline 1590.4
2816 Male, age 47, midline 1543.4
Cervical spinal cord, dorsal horn
nTPM: 1892.1
2173 Female, age 72, unknown 2687.8
2296 Male, age 66, both hemispheres 2026.8
2069 Male, age 47, both hemispheres 1970.7
2721 Male, age 90, both hemispheres 1726.9
2297 Male, age 75, both hemispheres 1471.6
1877 Male, age 55, unknown 1468.7
Cervical spinal cord, ventral horn
nTPM: 1953.0
2098 Female, age 72, unknown 2376.8
2809 Male, age 90, both hemispheres 1920.7
2295 Male, age 66, both hemispheres 1904.9
2480 Male, age 75, both hemispheres 1896.6
2068 Male, age 55, unknown 1863.3
2820 Female, age 79, both hemispheres 1755.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2757.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 2757.7
Samples: 204

Max nTPM: 5336.0
Min nTPM: 1580.3
Std nTPM: 602.3
Median nTPM: 2673.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 5336.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 5177.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 4871.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 4713.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4150.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 4031.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 4015.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 4013.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 3976.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 3942.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 3905.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 3763.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 3754.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 3708.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 3705.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 3645.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 3643.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3622.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3612.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 3524.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 3497.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3487.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3478.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3440.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3427.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3424.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 3394.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 3362.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 3358.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3350.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 3331.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3284.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3270.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 3263.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 3236.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 3198.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 3194.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 3144.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 3143.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3143.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 3111.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 3092.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 3088.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 3073.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 3069.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3067.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 3061.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3055.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3034.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 3031.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 3029.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 3024.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 3015.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3000.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 3000.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 2982.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 2973.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 2970.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2970.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 2963.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 2952.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2950.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 2940.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2938.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2921.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2921.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2918.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 2913.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2910.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 2904.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 2903.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 2902.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 2870.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 2866.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 2863.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 2863.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2850.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2847.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2828.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 2827.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2826.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2814.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2811.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2767.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2760.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 2757.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2752.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2743.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2740.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2739.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2738.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 2719.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 2718.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 2716.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2710.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2710.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2703.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2686.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 2684.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2683.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2683.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 2675.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2672.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 2667.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 2661.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 2657.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2649.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2636.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 2627.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2626.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2624.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2620.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2604.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2601.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2596.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2594.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 2586.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2575.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2554.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2549.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2537.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2533.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 2526.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 2523.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 2522.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 2516.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 2514.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2513.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 2509.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 2506.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 2504.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2504.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 2497.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 2482.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2477.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2469.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2465.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2455.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2449.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 2445.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 2439.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 2428.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2424.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2422.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 2417.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2405.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2390.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 2387.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2381.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2379.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2374.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2370.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2361.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 2359.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2355.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2353.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2343.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2343.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2338.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2330.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2322.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 2315.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 2304.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2296.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2294.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 2277.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2277.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2274.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2262.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2241.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2237.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2231.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 2226.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 2224.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2223.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 2208.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2201.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 2189.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2187.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2177.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 2169.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2162.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 2126.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 2122.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2112.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2087.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 2080.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 2047.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2036.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2030.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1999.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1972.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 1968.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1914.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1907.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1893.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1890.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1886.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1825.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1788.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1729.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1716.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1669.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1580.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1505.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1505.4
FF:10159-103A6 76 years, female 1544.1
FF:10181-103D1 60 years, female 1466.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2233.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1993.0
Samples: 4

Max nTPM: 2095.8
Min nTPM: 1772.9
Sample A Female 2095.8
Sample B Female 1772.9
Sample C Male 2009.0
Sample D Male 2094.1
Ventral spinal cord
nTPM: 2233.2
Samples: 4

Max nTPM: 2387.5
Min nTPM: 2059.6
Sample A Female 2100.7
Sample B Female 2387.5
Sample C Male 2384.9
Sample D Male 2059.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo