MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3175.7 nTPM
HPA Brain:2353.0 nTPM
GTEx:3175.7 nTPM
FANTOM5:1228.9 Scaled Tags Per Million
Pig:2709.0 nTPM
Mouse:2762.3 nTPM
Allen mouse:28.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2353.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1608.7
2019 Male, age 18, unknown 1830.6
2411 Female, age 72, unknown 1726.1
2586 Male, age 75, left hemisphere 1688.8
1827 Male, age 72, unknown 1687.1
2828 Female, age 72, unknown 1685.1
2666 Male, age 74, left hemisphere 1609.5
1870 Female, age 42, unknown 1551.0
1833 Male, age 53, unknown 1540.0
2219 Male, age 76, both hemispheres 1385.4
1830 Male, age 51, unknown 1383.8
Dorsal raphe nucleus
nTPM: 1790.1
2298 Female, age 72, unknown 2087.6
2047 Male, age 72, unknown 1879.7
1828 Male, age 53, unknown 1841.0
2750 Male, age 76, both hemispheres 1744.8
2016 Female, age 72, unknown 1397.1
Inferior colliculus
nTPM: 1683.4
2097 Female, age 72, unknown 1945.5
1890 Male, age 53, unknown 1827.3
1848 Female, age 42, unknown 1542.1
2849 Male, age 72, unknown 1418.8
Median raphe nucleus
nTPM: 2353.0
2220 Male, age 76, midline 2353.0
Periaquaductal grey, anterior
nTPM: 1701.2
1795 Male, age 51, unknown 1717.3
1947 Male, age 18, unknown 1710.2
2502 Female, age 75, unknown 1676.2
Periaquaductal grey, dorsal
nTPM: 1364.5
1831 Male, age 72, unknown 1438.2
2850 Male, age 76, both hemispheres 1434.7
1840 Male, age 53, unknown 1341.4
2464 Female, age 72, unknown 1243.6
Periaquaductal grey, lateral
nTPM: 1363.5
2272 Male, age 74, both hemispheres 1493.3
2053 Male, age 18, unknown 1347.6
2140 Male, age 76, both hemispheres 1249.7
Pretectal area
nTPM: 1807.6
1817 Female, age 42, unknown 2325.8
1944 Female, age 72, unknown 2273.8
2007 Male, age 72, unknown 2148.8
1816 Male, age 51, unknown 2142.7
2667 Female, age 75, unknown 1932.0
1815 Male, age 53, unknown 1860.5
2273 Male, age 74, both hemispheres 1618.5
2224 Female, age 72, unknown 1571.4
2407 Male, age 75, both hemispheres 1438.5
2825 Male, age 18, unknown 1371.8
2316 Male, age 76, right hemisphere 1200.1
Red nucleus
nTPM: 1728.8
1821 Female, age 72, unknown 2112.8
1865 Male, age 51, unknown 1848.6
2785 Male, age 18, unknown 1827.6
1954 Female, age 42, unknown 1825.9
2725 Female, age 75, unknown 1822.2
2823 Male, age 76, right hemisphere 1727.1
2503 Female, age 72, unknown 1718.1
2769 Male, age 72, unknown 1711.9
1904 Male, age 53, unknown 1691.1
2227 Male, age 72, unknown 1656.3
2588 Male, age 74, left hemisphere 1447.7
2584 Male, age 75, left hemisphere 1356.9
Substantia nigra
nTPM: 2198.0
1916 Female, age 42, unknown 3320.9
1851 Male, age 51, unknown 2528.5
1941 Male, age 53, unknown 2323.1
1889 Female, age 72, unknown 2290.6
2241 Male, age 72, unknown 2246.2
2699 Male, age 18, unknown 2185.1
2665 Male, age 74, both hemispheres 1989.7
2409 Female, age 72, unknown 1982.5
2590 Female, age 75, unknown 1568.2
2583 Male, age 75, right hemisphere 1544.9
Superior colliculus
nTPM: 1601.5
2087 Female, age 72, unknown 1994.0
2668 Female, age 75, unknown 1902.4
1796 Male, age 53, unknown 1753.4
2261 Male, age 18, unknown 1660.1
2587 Male, age 74, left hemisphere 1638.5
2664 Male, age 75, both hemispheres 1591.6
1913 Female, age 42, unknown 1519.6
1895 Male, age 76, right hemisphere 1340.3
1839 Male, age 51, unknown 1315.8
1995 Male, age 72, unknown 1299.4
Ventral tegmental area
nTPM: 2001.3
1915 Female, age 42, unknown 2416.9
2410 Female, age 72, unknown 2338.5
2218 Male, age 76, both hemispheres 2202.6
2223 Female, age 72, unknown 1791.3
1942 Male, age 51, unknown 1776.1
2021 Male, age 53, unknown 1482.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3175.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3175.7
Samples: 183

Max nTPM: 6840.7
Min nTPM: 1720.5
Std nTPM: 769.8
Median nTPM: 3025.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 6840.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 6235.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 5209.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 5202.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 5097.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4769.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 4684.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 4649.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4623.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 4527.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 4350.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1228.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1228.9
FF:10158-103A5 76 years, female 1228.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2709.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2276.5
Samples: 4

Max nTPM: 3158.8
Min nTPM: 1615.7
Sample A Female 3158.8
Sample B Female 1795.2
Sample C Male 2536.1
Sample D Male 1615.7
Midbrain
nTPM: 2434.9
Samples: 4

Max nTPM: 2818.1
Min nTPM: 2114.3
Sample A Female 2427.3
Sample B Female 2114.3
Sample C Male 2818.1
Sample D Male 2379.8
Periaqueductal gray
nTPM: 1783.0
Samples: 3

Max nTPM: 1944.3
Min nTPM: 1463.1
Sample B Female 1941.5
Sample C Male 1944.3
Sample D Male 1463.1
Superior colliculi
nTPM: 2709.0
Samples: 4

Max nTPM: 3253.0
Min nTPM: 2034.6
Sample A Female 3253.0
Sample B Female 2034.6
Sample C Male 3167.1
Sample D Male 2381.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2762.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 2762.3
Samples: 4

Max nTPM: 2852.6
Min nTPM: 2665.4
Sample A Male 2852.6
Sample B Male 2684.7
Sample C Female 2665.4
Sample D Female 2846.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 28.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 28.2
70276861 Antisense, RP_050531_01_D11, Mouse strain C57BL/6J (56 days, male) 28.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo