MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.0 nTPM
HPA Brain:76.3 nTPM
GTEx:30.0 nTPM
FANTOM5:107.2 Scaled Tags Per Million
Pig:78.4 nTPM
Mouse:49.2 nTPM
Allen mouse:11.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.4
2019 Male, age 18, unknown 78.2
2586 Male, age 75, left hemisphere 74.8
2666 Male, age 74, left hemisphere 72.2
2828 Female, age 72, unknown 71.8
1827 Male, age 72, unknown 65.4
1833 Male, age 53, unknown 64.1
1870 Female, age 42, unknown 63.9
1830 Male, age 51, unknown 62.8
2219 Male, age 76, both hemispheres 62.8
2411 Female, age 72, unknown 58.2
Dorsal raphe nucleus
nTPM: 57.3
1828 Male, age 53, unknown 64.2
2016 Female, age 72, unknown 59.0
2750 Male, age 76, both hemispheres 56.7
2047 Male, age 72, unknown 53.5
2298 Female, age 72, unknown 52.9
Inferior colliculus
nTPM: 59.4
2849 Male, age 72, unknown 67.8
1890 Male, age 53, unknown 63.9
2097 Female, age 72, unknown 53.4
1848 Female, age 42, unknown 52.6
Median raphe nucleus
nTPM: 57.3
2220 Male, age 76, midline 57.3
Periaquaductal grey, anterior
nTPM: 58.0
2502 Female, age 75, unknown 59.7
1795 Male, age 51, unknown 58.4
1947 Male, age 18, unknown 56.0
Periaquaductal grey, dorsal
nTPM: 62.6
2850 Male, age 76, both hemispheres 74.2
1831 Male, age 72, unknown 65.0
1840 Male, age 53, unknown 55.6
2464 Female, age 72, unknown 55.5
Periaquaductal grey, lateral
nTPM: 58.8
2140 Male, age 76, both hemispheres 72.1
2272 Male, age 74, both hemispheres 53.6
2053 Male, age 18, unknown 50.8
Pretectal area
nTPM: 64.2
1817 Female, age 42, unknown 78.2
1815 Male, age 53, unknown 71.7
2007 Male, age 72, unknown 70.8
1816 Male, age 51, unknown 68.8
2407 Male, age 75, both hemispheres 66.0
1944 Female, age 72, unknown 62.0
2667 Female, age 75, unknown 60.9
2316 Male, age 76, right hemisphere 59.7
2825 Male, age 18, unknown 59.2
2224 Female, age 72, unknown 55.1
2273 Male, age 74, both hemispheres 54.1
Red nucleus
nTPM: 76.3
2725 Female, age 75, unknown 84.8
2503 Female, age 72, unknown 81.4
1904 Male, age 53, unknown 80.9
2785 Male, age 18, unknown 80.1
1865 Male, age 51, unknown 79.8
1821 Female, age 72, unknown 79.3
2823 Male, age 76, right hemisphere 76.3
2769 Male, age 72, unknown 73.1
2588 Male, age 74, left hemisphere 72.7
2227 Male, age 72, unknown 72.2
1954 Female, age 42, unknown 71.4
2584 Male, age 75, left hemisphere 63.2
Substantia nigra
nTPM: 70.7
1916 Female, age 42, unknown 82.6
2699 Male, age 18, unknown 80.3
1851 Male, age 51, unknown 77.0
2665 Male, age 74, both hemispheres 76.0
2590 Female, age 75, unknown 69.3
2583 Male, age 75, right hemisphere 68.5
1889 Female, age 72, unknown 68.4
2409 Female, age 72, unknown 65.5
1941 Male, age 53, unknown 62.5
2241 Male, age 72, unknown 56.7
Superior colliculus
nTPM: 61.8
1913 Female, age 42, unknown 72.2
1995 Male, age 72, unknown 68.8
2587 Male, age 74, left hemisphere 65.4
1796 Male, age 53, unknown 62.3
2087 Female, age 72, unknown 60.1
1839 Male, age 51, unknown 59.0
1895 Male, age 76, right hemisphere 58.7
2664 Male, age 75, both hemispheres 58.6
2668 Female, age 75, unknown 57.1
2261 Male, age 18, unknown 56.2
Ventral tegmental area
nTPM: 63.0
2218 Male, age 76, both hemispheres 71.6
1915 Female, age 42, unknown 66.1
2410 Female, age 72, unknown 64.6
2223 Female, age 72, unknown 63.4
2021 Male, age 53, unknown 56.2
1942 Male, age 51, unknown 56.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.0
Samples: 183

Max nTPM: 58.2
Min nTPM: 14.6
Std nTPM: 7.6
Median nTPM: 28.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 58.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 55.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 50.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 49.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 49.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 48.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 47.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 46.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 46.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 46.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 46.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 107.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.2
FF:10158-103A5 76 years, female 107.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 78.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.3
Samples: 4

Max nTPM: 78.2
Min nTPM: 65.3
Sample A Female 72.8
Sample B Female 65.3
Sample C Male 76.9
Sample D Male 78.2
Midbrain
nTPM: 78.4
Samples: 4

Max nTPM: 104.6
Min nTPM: 64.4
Sample A Female 104.6
Sample B Female 66.3
Sample C Male 78.4
Sample D Male 64.4
Periaqueductal gray
nTPM: 59.8
Samples: 3

Max nTPM: 62.6
Min nTPM: 54.7
Sample B Female 62.1
Sample C Male 62.6
Sample D Male 54.7
Superior colliculi
nTPM: 74.9
Samples: 4

Max nTPM: 82.1
Min nTPM: 67.7
Sample A Female 78.6
Sample B Female 67.7
Sample C Male 82.1
Sample D Male 71.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.3
Samples: 4

Max nTPM: 52.1
Min nTPM: 44.6
Sample A Male 44.6
Sample B Male 52.0
Sample C Female 52.1
Sample D Female 48.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.3
68745036 Antisense, RP_050210_01_B06, Mouse strain C57BL/6J (56 days, male) 11.3

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