MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.1 nTPM
HPA Brain:102.0 nTPM
GTEx:27.1 nTPM
FANTOM5:70.4 Scaled Tags Per Million
Pig:73.5 nTPM
Mouse:114.1 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 102.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.1
2411 Female, age 72, unknown 82.8
2219 Male, age 76, both hemispheres 80.2
2666 Male, age 74, left hemisphere 79.9
2019 Male, age 18, unknown 76.2
2586 Male, age 75, left hemisphere 75.3
1827 Male, age 72, unknown 74.8
1870 Female, age 42, unknown 69.9
1833 Male, age 53, unknown 68.3
2828 Female, age 72, unknown 63.5
1830 Male, age 51, unknown 60.0
Dorsal raphe nucleus
nTPM: 71.9
2750 Male, age 76, both hemispheres 82.9
2047 Male, age 72, unknown 80.3
2298 Female, age 72, unknown 80.3
1828 Male, age 53, unknown 68.1
2016 Female, age 72, unknown 48.0
Inferior colliculus
nTPM: 56.8
2849 Male, age 72, unknown 62.3
1848 Female, age 42, unknown 57.0
2097 Female, age 72, unknown 54.5
1890 Male, age 53, unknown 53.4
Median raphe nucleus
nTPM: 102.0
2220 Male, age 76, midline 102.0
Periaquaductal grey, anterior
nTPM: 77.4
1947 Male, age 18, unknown 82.1
1795 Male, age 51, unknown 78.7
2502 Female, age 75, unknown 71.2
Periaquaductal grey, dorsal
nTPM: 62.1
2850 Male, age 76, both hemispheres 72.3
1831 Male, age 72, unknown 62.4
1840 Male, age 53, unknown 59.3
2464 Female, age 72, unknown 54.5
Periaquaductal grey, lateral
nTPM: 57.8
2272 Male, age 74, both hemispheres 61.8
2053 Male, age 18, unknown 60.1
2140 Male, age 76, both hemispheres 51.6
Pretectal area
nTPM: 83.8
1944 Female, age 72, unknown 124.3
1816 Male, age 51, unknown 122.3
1817 Female, age 42, unknown 101.4
2007 Male, age 72, unknown 97.8
1815 Male, age 53, unknown 92.8
2667 Female, age 75, unknown 85.1
2224 Female, age 72, unknown 69.1
2407 Male, age 75, both hemispheres 64.3
2273 Male, age 74, both hemispheres 61.2
2825 Male, age 18, unknown 56.7
2316 Male, age 76, right hemisphere 47.1
Red nucleus
nTPM: 62.1
2785 Male, age 18, unknown 72.6
2725 Female, age 75, unknown 72.3
2584 Male, age 75, left hemisphere 70.9
1865 Male, age 51, unknown 64.7
2588 Male, age 74, left hemisphere 64.2
1821 Female, age 72, unknown 63.9
2503 Female, age 72, unknown 63.4
1904 Male, age 53, unknown 60.4
1954 Female, age 42, unknown 56.4
2227 Male, age 72, unknown 52.2
2823 Male, age 76, right hemisphere 52.0
2769 Male, age 72, unknown 51.8
Substantia nigra
nTPM: 86.4
1916 Female, age 42, unknown 116.6
1851 Male, age 51, unknown 92.2
1941 Male, age 53, unknown 91.8
1889 Female, age 72, unknown 90.5
2665 Male, age 74, both hemispheres 87.9
2241 Male, age 72, unknown 87.2
2409 Female, age 72, unknown 86.6
2699 Male, age 18, unknown 78.1
2583 Male, age 75, right hemisphere 68.5
2590 Female, age 75, unknown 64.7
Superior colliculus
nTPM: 70.2
2087 Female, age 72, unknown 90.1
2668 Female, age 75, unknown 79.6
1796 Male, age 53, unknown 79.1
2261 Male, age 18, unknown 78.3
1913 Female, age 42, unknown 72.0
2587 Male, age 74, left hemisphere 63.5
1895 Male, age 76, right hemisphere 62.8
1995 Male, age 72, unknown 60.2
1839 Male, age 51, unknown 59.0
2664 Male, age 75, both hemispheres 57.3
Ventral tegmental area
nTPM: 83.7
2218 Male, age 76, both hemispheres 98.9
2410 Female, age 72, unknown 98.2
1915 Female, age 42, unknown 86.5
2223 Female, age 72, unknown 78.9
2021 Male, age 53, unknown 72.7
1942 Male, age 51, unknown 66.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.1
Samples: 183

Max nTPM: 80.9
Min nTPM: 5.2
Std nTPM: 13.6
Median nTPM: 22.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 70.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 65.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 63.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 60.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 55.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 54.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 54.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 70.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.4
FF:10158-103A5 76 years, female 70.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.5
Samples: 4

Max nTPM: 99.0
Min nTPM: 45.4
Sample A Female 99.0
Sample B Female 55.8
Sample C Male 93.7
Sample D Male 45.4
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 82.0
Min nTPM: 51.8
Sample A Female 67.8
Sample B Female 55.1
Sample C Male 82.0
Sample D Male 51.8
Periaqueductal gray
nTPM: 48.9
Samples: 3

Max nTPM: 61.0
Min nTPM: 39.4
Sample B Female 46.3
Sample C Male 61.0
Sample D Male 39.4
Superior colliculi
nTPM: 65.8
Samples: 4

Max nTPM: 87.0
Min nTPM: 53.9
Sample A Female 64.1
Sample B Female 53.9
Sample C Male 87.0
Sample D Male 58.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 114.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.1
Samples: 4

Max nTPM: 116.6
Min nTPM: 111.9
Sample A Male 115.0
Sample B Male 112.7
Sample C Female 111.9
Sample D Female 116.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
72004457 Antisense, RP_050915_02_H12, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo