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  • TPI1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:251.1 nTPM
HPA Brain:276.4 nTPM
GTEx:251.1 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:326.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

276.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 252.5
1981 Female, age 72, midline 282.9
2194 Female, age 79, both hemispheres 273.3
2565 Male, age 75, midline 269.8
2816 Male, age 47, midline 228.6
2048 Male, age 55, midline 208.1
Cervical spinal cord, dorsal horn
nTPM: 259.3
2173 Female, age 72, unknown 316.6
2297 Male, age 75, both hemispheres 284.6
2069 Male, age 47, both hemispheres 269.9
2296 Male, age 66, both hemispheres 249.1
2721 Male, age 90, both hemispheres 228.4
1877 Male, age 55, unknown 207.4
Cervical spinal cord, ventral horn
nTPM: 276.4
2480 Male, age 75, both hemispheres 320.5
2809 Male, age 90, both hemispheres 285.3
2068 Male, age 55, unknown 276.6
2098 Female, age 72, unknown 263.5
2820 Female, age 79, both hemispheres 256.8
2295 Male, age 66, both hemispheres 255.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 251.1
Samples: 204

Max nTPM: 621.4
Min nTPM: 94.3
Std nTPM: 63.7
Median nTPM: 233.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 621.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 464.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 447.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 437.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 399.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 398.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 388.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 383.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 381.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 377.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 372.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 370.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 367.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 367.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 364.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 353.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 351.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 349.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 348.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 346.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 342.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 334.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 331.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 325.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 325.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 322.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 322.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 322.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 320.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 319.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 314.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 313.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 308.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 306.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 303.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 303.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 301.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 296.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 295.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 294.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 293.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 291.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 290.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 289.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 287.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 284.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 284.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 278.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 278.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 275.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 274.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 273.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 272.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 268.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 268.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 266.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 265.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 265.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 264.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 264.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 262.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 261.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 260.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 260.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 259.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 259.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 258.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 256.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 256.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 256.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 254.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 252.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 252.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 252.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 251.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 249.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 248.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 248.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 248.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 245.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 244.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 244.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 243.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 242.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 242.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 241.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 241.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 240.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 240.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 240.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 239.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 238.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 238.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 238.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 238.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 237.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 237.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 235.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 235.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 234.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 234.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 234.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 233.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 232.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 231.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 230.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 230.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 229.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 228.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 228.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 228.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 227.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 227.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 227.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 227.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 226.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 226.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 226.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 225.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 225.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 224.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 224.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 223.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 222.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 222.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 221.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 221.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 221.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 221.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 220.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 220.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 220.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 219.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 218.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 218.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 218.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 218.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 217.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 217.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 216.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 216.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 215.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 215.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 215.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 214.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 214.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 213.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 212.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 211.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 211.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 211.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 211.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 211.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 211.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 210.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 210.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 210.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 210.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 210.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 208.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 208.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 208.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 207.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 207.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 206.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 206.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 205.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 205.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 204.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 204.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 204.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 203.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 200.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 199.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 199.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 199.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 198.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 198.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 197.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 196.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 195.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 195.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 194.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 194.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 193.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 193.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 192.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 189.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 189.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 189.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 189.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 189.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 188.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 187.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 186.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 180.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 173.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 171.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 168.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 164.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 164.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 163.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 162.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 94.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 21.0
FF:10159-103A6 76 years, female 21.4
FF:10181-103D1 60 years, female 20.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

326.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 285.8
Samples: 4

Max nTPM: 319.7
Min nTPM: 246.8
Sample A Female 263.7
Sample B Female 246.8
Sample C Male 312.8
Sample D Male 319.7
Ventral spinal cord
nTPM: 326.4
Samples: 4

Max nTPM: 376.8
Min nTPM: 288.2
Sample A Female 288.2
Sample B Female 348.4
Sample C Male 376.8
Sample D Male 292.2

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