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  • TPI1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:473.6 nTPM
HPA Brain:305.9 nTPM
GTEx:473.6 nTPM
FANTOM5:37.6 Scaled Tags Per Million
Pig:306.2 nTPM
Mouse:908.6 nTPM
Allen mouse:25.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

305.9
Sample id Sample description nTPM
Amygdala
nTPM: 305.9
2814 Male, age 76, right hemisphere 439.0
2695 Female, age 67, right hemisphere 289.2
2514 Male, age 75, right hemisphere 289.1
1987 Female, age 91, left hemisphere 266.9
2517 Female, age 94, left hemisphere 245.3
Basal amygdala
nTPM: 276.6
2243 Female, age 91, right hemisphere 328.5
2110 Male, age 80, left hemisphere 308.4
1955 Male, age 76, both hemispheres 280.1
2609 Male, age 75, right hemisphere 273.5
2685 Female, age 94, left hemisphere 266.7
2827 Female, age 67, right hemisphere 202.5
Central amygdala
nTPM: 298.8
1905 Male, age 76, both hemispheres 425.6
2826 Female, age 94, left hemisphere 295.9
2239 Male, age 80, left hemisphere 274.9
2515 Male, age 75, right hemisphere 252.8
2701 Female, age 91, right hemisphere 244.8
Corticomedial amygdala
nTPM: 282.0
2829 Male, age 80, left hemisphere 344.5
2242 Female, age 91, right hemisphere 330.8
2240 Male, age 76, both hemispheres 279.2
2428 Male, age 75, right hemisphere 264.3
2429 Female, age 94, left hemisphere 257.2
2535 Female, age 67, right hemisphere 216.0
Lateral amygdala
nTPM: 259.5
1883 Male, age 76, both hemispheres 361.6
2534 Female, age 94, left hemisphere 317.8
2516 Male, age 75, right hemisphere 260.5
2255 Female, age 91, right hemisphere 229.4
2830 Female, age 67, right hemisphere 203.1
2256 Male, age 80, left hemisphere 184.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

473.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 473.6
Samples: 181

Max nTPM: 1437.0
Min nTPM: 225.8
Std nTPM: 164.7
Median nTPM: 447.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1437.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1065.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 959.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 914.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 913.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 862.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 836.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 809.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 806.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 782.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 765.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 751.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 734.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 725.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 690.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 680.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 669.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 650.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 646.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 639.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 637.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 624.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 623.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 621.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 616.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 615.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 613.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 607.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 604.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 601.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 596.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 593.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 590.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 582.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 577.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 564.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 562.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 558.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 556.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 555.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 551.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 546.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 543.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 543.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 539.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 534.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 533.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 532.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 530.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 519.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 519.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 518.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 517.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 516.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 516.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 514.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 511.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 508.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 504.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 503.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 503.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 502.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 497.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 496.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 495.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 493.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 488.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 488.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 486.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 484.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 482.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 480.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 477.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 476.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 475.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 475.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 470.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 467.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 466.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 466.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 466.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 464.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 463.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 461.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 461.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 456.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 454.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 452.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 450.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 448.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 447.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 445.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 444.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 443.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 442.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 441.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 437.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 433.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 432.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 431.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 430.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 429.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 427.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 426.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 422.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 419.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 419.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 419.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 418.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 417.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 415.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 415.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 414.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 414.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 408.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 408.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 407.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 407.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 406.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 401.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 399.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 396.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 395.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 390.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 388.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 387.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 387.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 387.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 387.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 385.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 384.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 382.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 382.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 382.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 372.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 365.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 361.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 361.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 359.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 354.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 348.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 348.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 344.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 341.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 341.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 341.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 340.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 340.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 339.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 336.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 336.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 336.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 335.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 334.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 333.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 331.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 325.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 322.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 318.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 316.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 308.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 306.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 305.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 302.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 294.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 293.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 291.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 289.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 289.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 276.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 272.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 272.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 270.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 269.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 246.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 236.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 234.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 232.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 227.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 227.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 225.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 37.6
FF:10151-102I7 76 years, female 37.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.2
Pig sample Sample description nTPM
Amygdala
nTPM: 306.2
Samples: 4

Max nTPM: 429.2
Min nTPM: 225.8
Sample A Female 429.2
Sample B Female 225.8
Sample C Male 295.4
Sample D Male 274.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

908.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 908.6
Samples: 4

Max nTPM: 968.0
Min nTPM: 874.4
Sample A Male 968.0
Sample B Male 901.1
Sample C Female 874.4
Sample D Female 890.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.5
70191997 Antisense, RP_050517_01_A08, Mouse strain C57BL/6J (56 days, male) 25.5

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