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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • ENO2
EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:188.6 nTPM
HPA Brain:344.0 nTPM
GTEx:188.6 nTPM
FANTOM5:87.8 Scaled Tags Per Million
Macaque:273.1 nTPM
Mouse:632.5 nTPM
Rat:525.3 nTPM
Pig:491.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 296.5
2019 Male, age 18, unknown 390.0
1827 Male, age 72, unknown 363.4
2666 Male, age 74, left hemisphere 347.9
2411 Female, age 72, unknown 336.0
2219 Male, age 76, both hemispheres 330.4
2586 Male, age 75, left hemisphere 270.4
2828 Female, age 72, unknown 261.4
1870 Female, age 42, unknown 237.8
1833 Male, age 53, unknown 222.7
1830 Male, age 51, unknown 204.9
Dorsal raphe nucleus
nTPM: 298.5
2298 Female, age 72, unknown 409.8
2047 Male, age 72, unknown 326.2
1828 Male, age 53, unknown 317.9
2750 Male, age 76, both hemispheres 268.2
2016 Female, age 72, unknown 170.5
Inferior colliculus
nTPM: 287.3
2097 Female, age 72, unknown 353.3
1848 Female, age 42, unknown 287.4
1890 Male, age 53, unknown 280.6
2849 Male, age 72, unknown 227.7
Median raphe nucleus
nTPM: 332.5
2220 Male, age 76, midline 332.5
Periaquaductal grey, anterior
nTPM: 303.6
1795 Male, age 51, unknown 328.9
1947 Male, age 18, unknown 303.5
2502 Female, age 75, unknown 278.4
Periaquaductal grey, dorsal
nTPM: 229.0
1831 Male, age 72, unknown 251.1
1840 Male, age 53, unknown 243.9
2464 Female, age 72, unknown 229.4
2850 Male, age 76, both hemispheres 191.6
Periaquaductal grey, lateral
nTPM: 213.1
2272 Male, age 74, both hemispheres 244.0
2053 Male, age 18, unknown 206.7
2140 Male, age 76, both hemispheres 188.5
Pretectal area
nTPM: 344.0
1944 Female, age 72, unknown 501.6
1816 Male, age 51, unknown 490.7
2007 Male, age 72, unknown 487.1
1817 Female, age 42, unknown 452.6
1815 Male, age 53, unknown 345.3
2667 Female, age 75, unknown 326.2
2224 Female, age 72, unknown 301.0
2407 Male, age 75, both hemispheres 228.8
2273 Male, age 74, both hemispheres 218.9
2316 Male, age 76, right hemisphere 217.0
2825 Male, age 18, unknown 215.4
Red nucleus
nTPM: 238.2
2785 Male, age 18, unknown 341.6
1821 Female, age 72, unknown 283.4
2584 Male, age 75, left hemisphere 274.3
2725 Female, age 75, unknown 250.3
1954 Female, age 42, unknown 241.3
2588 Male, age 74, left hemisphere 236.4
2823 Male, age 76, right hemisphere 226.2
1865 Male, age 51, unknown 204.0
1904 Male, age 53, unknown 203.4
2227 Male, age 72, unknown 201.8
2503 Female, age 72, unknown 200.5
2769 Male, age 72, unknown 194.7
Substantia nigra
nTPM: 323.6
1941 Male, age 53, unknown 449.3
1916 Female, age 42, unknown 442.1
1889 Female, age 72, unknown 420.7
1851 Male, age 51, unknown 358.2
2241 Male, age 72, unknown 333.8
2409 Female, age 72, unknown 283.8
2665 Male, age 74, both hemispheres 283.8
2590 Female, age 75, unknown 226.4
2583 Male, age 75, right hemisphere 223.5
2699 Male, age 18, unknown 214.1
Superior colliculus
nTPM: 284.0
2087 Female, age 72, unknown 410.6
2668 Female, age 75, unknown 386.0
1796 Male, age 53, unknown 318.1
2261 Male, age 18, unknown 316.6
1895 Male, age 76, right hemisphere 307.2
1839 Male, age 51, unknown 247.9
2664 Male, age 75, both hemispheres 231.3
1913 Female, age 42, unknown 219.8
2587 Male, age 74, left hemisphere 211.7
1995 Male, age 72, unknown 191.0
Ventral tegmental area
nTPM: 310.4
2218 Male, age 76, both hemispheres 392.8
2410 Female, age 72, unknown 374.3
1915 Female, age 42, unknown 341.0
1942 Male, age 51, unknown 291.7
2223 Female, age 72, unknown 242.7
2021 Male, age 53, unknown 219.7

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 188.6
Samples: 183

Max nTPM: 914.5
Min nTPM: 55.9
Std nTPM: 130.7
Median nTPM: 138.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 914.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 719.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 544.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 516.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 492.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 490.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 472.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 467.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 464.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 451.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 444.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 428.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 425.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 423.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 406.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 395.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 392.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 381.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 374.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 358.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 352.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 351.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 347.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 343.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 336.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 333.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 327.9
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 303.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 299.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 296.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 294.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 291.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 291.0
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 290.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 288.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 284.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 266.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 265.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 263.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 256.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 255.1
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 254.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 248.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 245.7
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 241.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 235.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 233.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 229.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 227.0
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 219.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 218.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 217.8
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 216.5
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 216.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 215.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 214.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 210.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 209.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 209.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 203.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 197.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 196.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 195.6
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 193.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 189.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 187.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 187.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 186.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 185.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 181.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 181.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 180.5
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 178.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 177.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 177.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 176.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 175.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 171.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 168.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 166.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 164.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 162.9
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 162.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 155.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 153.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 147.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 147.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 147.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 146.4
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 145.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 139.2
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 138.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 138.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 138.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 135.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 135.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 132.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 132.3
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 129.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 128.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 126.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 126.1
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 125.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 124.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 123.5
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 123.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 119.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 119.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 118.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 117.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 117.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 116.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 116.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 115.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 114.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 112.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 111.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 110.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 109.3
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 108.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 108.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 107.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 106.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 105.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 105.0
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 104.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 103.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 103.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 103.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 102.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 102.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 102.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 102.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 101.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 100.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 100.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 99.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 98.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 98.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 98.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 97.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 97.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 94.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 94.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 93.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 93.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 92.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 91.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 90.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 90.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 90.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 89.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 89.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 88.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 86.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 85.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 84.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 84.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 81.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 81.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 81.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 81.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 80.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 78.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 76.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 75.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 74.4
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 74.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 73.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 73.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 70.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 70.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 67.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 67.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 66.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 66.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 64.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 62.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 62.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 60.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 59.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 55.9
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

87.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.8
FF:10158-103A5 76 years, female 87.8

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 142.8
Samples: 1

Max nTPM: 142.8
Min nTPM: 142.8
Sample A 142.8
Midbrain
nTPM: 184.3
Samples: 1

Max nTPM: 184.3
Min nTPM: 184.3
Sample A 184.3
Superior colliculi
nTPM: 273.1
Samples: 1

Max nTPM: 273.1
Min nTPM: 273.1
Sample A 273.1

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

491.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 350.4
Samples: 3

Max nTPM: 451.3
Min nTPM: 205.5
Sample A Female 451.3
Sample B Female 205.5
Sample C Male 394.3
Midbrain
nTPM: 491.8
Samples: 3

Max nTPM: 722.7
Min nTPM: 237.2
Sample B Female 237.2
Sample C Male 722.7
Sample D Male 515.6
Periaqueductal gray
nTPM: 267.3
Samples: 3

Max nTPM: 345.4
Min nTPM: 219.1
Sample B Female 237.3
Sample C Male 345.4
Sample D Male 219.1
Superior colliculi
nTPM: 490.8
Samples: 4

Max nTPM: 701.5
Min nTPM: 312.9
Sample A Female 513.2
Sample B Female 312.9
Sample C Male 701.5
Sample D Male 435.4

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

632.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 632.5
Samples: 4

Max nTPM: 660.9
Min nTPM: 610.2
Sample A 614.0
Sample B 660.9
Sample C 644.8
Sample D 610.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

525.3
Rat sample Sample description nTPM
Midbrain
nTPM: 525.3
Samples: 4

Max nTPM: 562.3
Min nTPM: 492.4
Sample A 492.4
Sample A 562.3
Sample A 552.3
Sample A 494.1

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