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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:41.6 nTPM
HPA Brain:68.5 nTPM
GTEx:41.6 nTPM
FANTOM5:91.0 Scaled Tags Per Million
Pig:89.5 nTPM
Mouse:136.9 nTPM
Allen mouse:9.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.5
Sample id Sample description nTPM
Amygdala
nTPM: 46.1
2517 Female, age 94, left hemisphere 59.3
1987 Female, age 91, left hemisphere 55.1
2814 Male, age 76, right hemisphere 52.9
2514 Male, age 75, right hemisphere 38.9
2695 Female, age 67, right hemisphere 24.4
Basal amygdala
nTPM: 64.5
2243 Female, age 91, right hemisphere 99.6
2685 Female, age 94, left hemisphere 84.0
1955 Male, age 76, both hemispheres 60.0
2110 Male, age 80, left hemisphere 58.9
2609 Male, age 75, right hemisphere 44.4
2827 Female, age 67, right hemisphere 40.0
Central amygdala
nTPM: 54.7
2239 Male, age 80, left hemisphere 67.1
2826 Female, age 94, left hemisphere 64.2
2701 Female, age 91, right hemisphere 53.3
1905 Male, age 76, both hemispheres 52.9
2515 Male, age 75, right hemisphere 36.1
Corticomedial amygdala
nTPM: 68.5
2829 Male, age 80, left hemisphere 93.9
2242 Female, age 91, right hemisphere 87.8
2429 Female, age 94, left hemisphere 70.9
2240 Male, age 76, both hemispheres 64.5
2535 Female, age 67, right hemisphere 55.2
2428 Male, age 75, right hemisphere 38.5
Lateral amygdala
nTPM: 49.3
2534 Female, age 94, left hemisphere 75.8
1883 Male, age 76, both hemispheres 69.9
2255 Female, age 91, right hemisphere 49.4
2256 Male, age 80, left hemisphere 45.0
2516 Male, age 75, right hemisphere 28.2
2830 Female, age 67, right hemisphere 27.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 41.6
Samples: 181

Max nTPM: 126.4
Min nTPM: 5.8
Std nTPM: 22.8
Median nTPM: 38.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 126.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 106.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 104.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 92.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 87.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 85.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 84.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 84.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 83.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 83.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 83.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 83.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 80.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 79.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 79.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 77.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 76.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 75.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 75.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 73.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 71.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 69.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 69.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 68.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 68.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 67.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 67.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 66.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 66.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 65.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 65.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 65.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 64.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 64.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 63.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 63.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 61.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 61.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 61.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 59.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 59.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 58.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 56.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 55.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 55.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 54.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 53.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 53.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 53.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 52.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 52.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 52.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 52.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 52.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 51.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 50.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 50.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 49.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 49.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 49.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 48.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 48.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 48.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 48.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 48.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 47.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 47.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 46.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 46.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 46.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 45.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 45.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 45.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 45.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 43.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 43.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 43.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 43.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 42.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 42.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 42.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 41.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 40.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 40.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 39.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 39.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 38.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 38.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 38.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 38.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 38.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 38.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 37.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 36.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 36.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 35.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 35.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 34.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 34.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 34.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 34.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 33.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 33.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 33.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 33.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 32.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 32.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 32.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 32.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 31.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 31.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 31.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 31.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 31.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 31.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 30.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 30.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 29.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 29.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 29.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 28.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 28.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 28.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 27.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 27.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 27.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 26.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 26.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 26.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 25.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 24.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 24.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 24.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 23.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 21.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 21.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 21.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 21.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 20.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 20.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 20.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 20.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 19.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 19.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 19.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 19.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 19.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 18.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 18.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 18.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 18.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 18.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 17.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 17.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 17.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 16.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 16.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 16.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 16.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 16.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 16.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 15.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 15.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 15.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 15.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 14.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 13.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 13.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 13.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 12.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 12.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 12.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 11.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 11.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 11.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 11.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 10.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 10.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 8.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 7.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 5.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 91.0
FF:10151-102I7 76 years, female 91.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.5
Pig sample Sample description nTPM
Amygdala
nTPM: 89.5
Samples: 4

Max nTPM: 128.3
Min nTPM: 53.9
Sample A Female 128.3
Sample B Female 69.8
Sample C Male 53.9
Sample D Male 106.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 136.9
Samples: 4

Max nTPM: 143.3
Min nTPM: 129.1
Sample A Male 143.3
Sample B Male 140.1
Sample C Female 129.1
Sample D Female 135.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.8
69015158 Antisense, RP_050310_02_D09, Mouse strain C57BL/6J (56 days, male) 9.8
70436737 Antisense, RP_050310_02_D09, Mouse strain C57BL/6J (56 days, male) 6.0

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