MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA Brain:34.1 nTPM
GTEx:10.0 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:11.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
2586 Male, age 75, left hemisphere 45.2
2219 Male, age 76, both hemispheres 34.7
2666 Male, age 74, left hemisphere 31.1
1833 Male, age 53, unknown 30.8
1827 Male, age 72, unknown 28.8
2828 Female, age 72, unknown 27.6
1870 Female, age 42, unknown 27.0
1830 Male, age 51, unknown 26.8
2411 Female, age 72, unknown 26.3
2019 Male, age 18, unknown 25.3
Dorsal raphe nucleus
nTPM: 26.9
2750 Male, age 76, both hemispheres 30.2
1828 Male, age 53, unknown 27.5
2047 Male, age 72, unknown 26.8
2016 Female, age 72, unknown 26.3
2298 Female, age 72, unknown 23.4
Inferior colliculus
nTPM: 32.0
2849 Male, age 72, unknown 34.4
1890 Male, age 53, unknown 33.7
1848 Female, age 42, unknown 30.0
2097 Female, age 72, unknown 29.8
Median raphe nucleus
nTPM: 34.1
2220 Male, age 76, midline 34.1
Periaquaductal grey, anterior
nTPM: 30.9
2502 Female, age 75, unknown 34.7
1947 Male, age 18, unknown 30.0
1795 Male, age 51, unknown 28.1
Periaquaductal grey, dorsal
nTPM: 28.9
1840 Male, age 53, unknown 33.3
1831 Male, age 72, unknown 27.9
2464 Female, age 72, unknown 27.8
2850 Male, age 76, both hemispheres 26.4
Periaquaductal grey, lateral
nTPM: 25.9
2053 Male, age 18, unknown 29.5
2272 Male, age 74, both hemispheres 25.6
2140 Male, age 76, both hemispheres 22.7
Pretectal area
nTPM: 29.1
1944 Female, age 72, unknown 36.4
1816 Male, age 51, unknown 35.3
1815 Male, age 53, unknown 30.5
2825 Male, age 18, unknown 30.3
2007 Male, age 72, unknown 28.9
2407 Male, age 75, both hemispheres 28.6
1817 Female, age 42, unknown 28.1
2667 Female, age 75, unknown 27.5
2224 Female, age 72, unknown 26.7
2316 Male, age 76, right hemisphere 25.1
2273 Male, age 74, both hemispheres 23.0
Red nucleus
nTPM: 28.4
2588 Male, age 74, left hemisphere 33.6
2584 Male, age 75, left hemisphere 33.2
1904 Male, age 53, unknown 29.2
2503 Female, age 72, unknown 29.1
1954 Female, age 42, unknown 28.5
2227 Male, age 72, unknown 28.4
2769 Male, age 72, unknown 27.8
1865 Male, age 51, unknown 27.0
2823 Male, age 76, right hemisphere 27.0
2725 Female, age 75, unknown 26.3
2785 Male, age 18, unknown 25.8
1821 Female, age 72, unknown 25.2
Substantia nigra
nTPM: 31.2
2665 Male, age 74, both hemispheres 35.4
1916 Female, age 42, unknown 34.9
2241 Male, age 72, unknown 34.4
2699 Male, age 18, unknown 32.6
1851 Male, age 51, unknown 32.0
2583 Male, age 75, right hemisphere 31.6
1889 Female, age 72, unknown 30.7
1941 Male, age 53, unknown 27.4
2590 Female, age 75, unknown 27.3
2409 Female, age 72, unknown 25.3
Superior colliculus
nTPM: 30.1
2664 Male, age 75, both hemispheres 35.9
2668 Female, age 75, unknown 34.1
2087 Female, age 72, unknown 33.1
2261 Male, age 18, unknown 31.7
1913 Female, age 42, unknown 28.2
2587 Male, age 74, left hemisphere 28.1
1839 Male, age 51, unknown 27.8
1796 Male, age 53, unknown 27.7
1895 Male, age 76, right hemisphere 27.5
1995 Male, age 72, unknown 27.2
Ventral tegmental area
nTPM: 29.9
2223 Female, age 72, unknown 32.8
1942 Male, age 51, unknown 32.5
2218 Male, age 76, both hemispheres 32.4
1915 Female, age 42, unknown 28.8
2410 Female, age 72, unknown 26.8
2021 Male, age 53, unknown 26.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.0
Samples: 183

Max nTPM: 18.2
Min nTPM: 4.3
Std nTPM: 2.1
Median nTPM: 10.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 18.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 18.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 15.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 14.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 14.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 13.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 13.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 13.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 13.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 12.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.6
FF:10158-103A5 76 years, female 52.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 30.7
Min nTPM: 20.6
Sample A Female 23.8
Sample B Female 20.6
Sample C Male 30.7
Sample D Male 27.1
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 28.5
Min nTPM: 25.2
Sample A Female 28.5
Sample B Female 25.2
Sample C Male 27.9
Sample D Male 25.7
Periaqueductal gray
nTPM: 22.2
Samples: 3

Max nTPM: 23.2
Min nTPM: 21.4
Sample B Female 23.2
Sample C Male 22.0
Sample D Male 21.4
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 17.3
Sample A Female 25.7
Sample B Female 17.3
Sample C Male 22.8
Sample D Male 26.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.5
Sample A Male 10.5
Sample B Male 11.3
Sample C Female 12.1
Sample D Female 12.1

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