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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:189.7 nTPM
HPA Brain:115.6 nTPM
GTEx:189.7 nTPM
FANTOM5:157.4 Scaled Tags Per Million
Pig:100.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 112.9
1981 Female, age 72, midline 142.6
2565 Male, age 75, midline 122.9
2816 Male, age 47, midline 113.6
2194 Female, age 79, both hemispheres 107.4
2048 Male, age 55, midline 78.3
Cervical spinal cord, dorsal horn
nTPM: 115.6
2296 Male, age 66, both hemispheres 152.7
2173 Female, age 72, unknown 138.2
2069 Male, age 47, both hemispheres 113.5
1877 Male, age 55, unknown 103.4
2721 Male, age 90, both hemispheres 94.0
2297 Male, age 75, both hemispheres 91.9
Cervical spinal cord, ventral horn
nTPM: 106.5
2098 Female, age 72, unknown 135.9
2480 Male, age 75, both hemispheres 117.2
2809 Male, age 90, both hemispheres 103.7
2068 Male, age 55, unknown 100.0
2295 Male, age 66, both hemispheres 96.3
2820 Female, age 79, both hemispheres 85.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 189.7
Samples: 204

Max nTPM: 287.8
Min nTPM: 110.5
Std nTPM: 36.8
Median nTPM: 186.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 287.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 284.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 282.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 276.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 272.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 266.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 259.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 258.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 258.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 251.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 250.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 249.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 249.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 248.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 247.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 245.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 245.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 241.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 238.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 238.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 237.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 237.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 237.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 236.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 235.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 235.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 234.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 233.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 232.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 231.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 231.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 230.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 227.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 227.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 226.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 225.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 225.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 224.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 224.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 222.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 219.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 219.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 219.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 217.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 216.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 215.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 214.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 214.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 214.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 214.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 214.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 211.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 211.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 211.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 210.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 210.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 209.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 209.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 209.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 209.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 208.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 208.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 208.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 207.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 206.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 206.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 205.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 205.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 204.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 203.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 202.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 202.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 202.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 202.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 201.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 201.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 201.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 201.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 199.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 198.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 197.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 196.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 195.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 194.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 194.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 193.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 192.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 192.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 192.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 191.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 190.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 190.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 190.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 189.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 189.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 189.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 187.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 187.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 187.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 187.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 186.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 186.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 186.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 186.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 186.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 185.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 185.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 184.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 184.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 183.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 183.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 182.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 182.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 181.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 181.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 181.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 181.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 181.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 180.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 180.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 180.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 179.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 179.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 179.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 179.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 179.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 179.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 178.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 178.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 178.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 177.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 177.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 177.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 176.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 176.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 176.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 175.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 175.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 175.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 174.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 174.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 172.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 171.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 170.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 170.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 170.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 169.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 169.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 168.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 167.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 167.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 167.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 166.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 165.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 165.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 163.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 163.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 163.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 162.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 162.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 160.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 160.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 159.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 158.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 155.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 154.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 152.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 152.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 152.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 151.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 151.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 150.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 149.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 149.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 149.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 147.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 146.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 145.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 144.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 141.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 141.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 141.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 140.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 139.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 138.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 136.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 135.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 135.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 134.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 133.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 133.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 133.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 132.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 132.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 131.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 131.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 128.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 125.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 125.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 121.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 119.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 114.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 111.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 110.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

157.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 157.4
FF:10181-103D1 60 years, female 191.9
FF:10159-103A6 76 years, female 122.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 82.7
Samples: 4

Max nTPM: 95.6
Min nTPM: 75.9
Sample A Female 75.9
Sample B Female 78.1
Sample C Male 95.6
Sample D Male 81.1
Ventral spinal cord
nTPM: 100.7
Samples: 4

Max nTPM: 104.4
Min nTPM: 91.5
Sample A Female 91.5
Sample B Female 103.9
Sample C Male 103.1
Sample D Male 104.4

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