MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:176.3 nTPM
HPA Brain:109.4 nTPM
GTEx:176.3 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:93.3 nTPM
Mouse:61.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 99.9
2411 Female, age 72, unknown 122.3
1827 Male, age 72, unknown 113.6
2019 Male, age 18, unknown 108.6
2828 Female, age 72, unknown 106.4
2666 Male, age 74, left hemisphere 104.6
1870 Female, age 42, unknown 97.8
1833 Male, age 53, unknown 90.3
2219 Male, age 76, both hemispheres 89.2
1830 Male, age 51, unknown 86.9
2586 Male, age 75, left hemisphere 79.8
Dorsal raphe nucleus
nTPM: 96.8
2298 Female, age 72, unknown 121.5
2750 Male, age 76, both hemispheres 97.9
1828 Male, age 53, unknown 96.4
2047 Male, age 72, unknown 87.4
2016 Female, age 72, unknown 80.7
Inferior colliculus
nTPM: 86.1
2097 Female, age 72, unknown 107.2
1848 Female, age 42, unknown 82.5
2849 Male, age 72, unknown 79.9
1890 Male, age 53, unknown 74.6
Median raphe nucleus
nTPM: 109.4
2220 Male, age 76, midline 109.4
Periaquaductal grey, anterior
nTPM: 97.9
1795 Male, age 51, unknown 103.4
1947 Male, age 18, unknown 101.4
2502 Female, age 75, unknown 88.8
Periaquaductal grey, dorsal
nTPM: 81.3
1831 Male, age 72, unknown 90.3
2850 Male, age 76, both hemispheres 81.5
2464 Female, age 72, unknown 77.5
1840 Male, age 53, unknown 76.1
Periaquaductal grey, lateral
nTPM: 94.7
2272 Male, age 74, both hemispheres 115.1
2053 Male, age 18, unknown 88.9
2140 Male, age 76, both hemispheres 80.0
Pretectal area
nTPM: 104.0
1817 Female, age 42, unknown 127.6
1815 Male, age 53, unknown 118.0
1816 Male, age 51, unknown 117.8
2007 Male, age 72, unknown 114.5
1944 Female, age 72, unknown 113.1
2224 Female, age 72, unknown 104.9
2273 Male, age 74, both hemispheres 104.7
2667 Female, age 75, unknown 101.2
2407 Male, age 75, both hemispheres 86.3
2825 Male, age 18, unknown 83.3
2316 Male, age 76, right hemisphere 72.6
Red nucleus
nTPM: 99.7
1821 Female, age 72, unknown 118.8
2785 Male, age 18, unknown 107.5
1954 Female, age 42, unknown 107.4
1904 Male, age 53, unknown 105.6
1865 Male, age 51, unknown 103.7
2503 Female, age 72, unknown 103.2
2227 Male, age 72, unknown 99.9
2769 Male, age 72, unknown 99.2
2725 Female, age 75, unknown 98.4
2584 Male, age 75, left hemisphere 89.2
2823 Male, age 76, right hemisphere 84.1
2588 Male, age 74, left hemisphere 79.3
Substantia nigra
nTPM: 95.7
1916 Female, age 42, unknown 114.2
1889 Female, age 72, unknown 110.7
1941 Male, age 53, unknown 104.5
1851 Male, age 51, unknown 104.1
2583 Male, age 75, right hemisphere 92.9
2409 Female, age 72, unknown 92.3
2699 Male, age 18, unknown 87.6
2590 Female, age 75, unknown 87.0
2241 Male, age 72, unknown 84.1
2665 Male, age 74, both hemispheres 80.0
Superior colliculus
nTPM: 96.7
2668 Female, age 75, unknown 117.2
2261 Male, age 18, unknown 108.8
2087 Female, age 72, unknown 108.3
2587 Male, age 74, left hemisphere 105.9
1796 Male, age 53, unknown 104.6
1913 Female, age 42, unknown 96.1
1839 Male, age 51, unknown 88.5
1995 Male, age 72, unknown 88.0
1895 Male, age 76, right hemisphere 87.1
2664 Male, age 75, both hemispheres 62.8
Ventral tegmental area
nTPM: 101.2
2410 Female, age 72, unknown 118.3
2218 Male, age 76, both hemispheres 107.3
1915 Female, age 42, unknown 102.1
2223 Female, age 72, unknown 99.5
2021 Male, age 53, unknown 90.9
1942 Male, age 51, unknown 89.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 176.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 176.3
Samples: 183

Max nTPM: 300.6
Min nTPM: 99.6
Std nTPM: 36.6
Median nTPM: 171.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 300.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 288.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 270.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 261.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 261.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 259.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 257.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 254.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 243.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 236.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 236.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.6
FF:10158-103A5 76 years, female 143.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 93.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.1
Samples: 4

Max nTPM: 106.2
Min nTPM: 67.3
Sample A Female 106.2
Sample B Female 67.3
Sample C Male 86.5
Sample D Male 84.2
Midbrain
nTPM: 89.0
Samples: 4

Max nTPM: 118.6
Min nTPM: 72.2
Sample A Female 118.6
Sample B Female 80.1
Sample C Male 85.1
Sample D Male 72.2
Periaqueductal gray
nTPM: 63.7
Samples: 3

Max nTPM: 70.6
Min nTPM: 58.7
Sample B Female 58.7
Sample C Male 70.6
Sample D Male 61.8
Superior colliculi
nTPM: 93.3
Samples: 4

Max nTPM: 108.9
Min nTPM: 77.7
Sample A Female 108.9
Sample B Female 90.3
Sample C Male 96.2
Sample D Male 77.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 65.5
Min nTPM: 57.0
Sample A Male 65.5
Sample B Male 57.0
Sample C Female 59.8
Sample D Female 63.6

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