MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:27.4 nTPM
GTEx:10.1 nTPM
FANTOM5:36.7 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:26.6 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.5
2019 Male, age 18, unknown 25.5
1833 Male, age 53, unknown 25.3
1830 Male, age 51, unknown 25.2
1870 Female, age 42, unknown 25.2
2411 Female, age 72, unknown 25.1
2666 Male, age 74, left hemisphere 23.4
1827 Male, age 72, unknown 22.8
2828 Female, age 72, unknown 21.9
2219 Male, age 76, both hemispheres 21.1
2586 Male, age 75, left hemisphere 19.7
Dorsal raphe nucleus
nTPM: 22.5
2750 Male, age 76, both hemispheres 25.3
1828 Male, age 53, unknown 22.7
2047 Male, age 72, unknown 22.1
2298 Female, age 72, unknown 21.3
2016 Female, age 72, unknown 21.0
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 24.1
1848 Female, age 42, unknown 23.6
1890 Male, age 53, unknown 23.4
2849 Male, age 72, unknown 21.2
Median raphe nucleus
nTPM: 23.3
2220 Male, age 76, midline 23.3
Periaquaductal grey, anterior
nTPM: 22.3
1947 Male, age 18, unknown 24.9
2502 Female, age 75, unknown 21.3
1795 Male, age 51, unknown 20.8
Periaquaductal grey, dorsal
nTPM: 20.9
1840 Male, age 53, unknown 22.5
2464 Female, age 72, unknown 21.9
1831 Male, age 72, unknown 20.4
2850 Male, age 76, both hemispheres 18.9
Periaquaductal grey, lateral
nTPM: 21.3
2272 Male, age 74, both hemispheres 22.3
2053 Male, age 18, unknown 21.8
2140 Male, age 76, both hemispheres 19.7
Pretectal area
nTPM: 23.6
1817 Female, age 42, unknown 25.7
2007 Male, age 72, unknown 25.5
1944 Female, age 72, unknown 24.9
1815 Male, age 53, unknown 24.7
2224 Female, age 72, unknown 23.5
2316 Male, age 76, right hemisphere 23.3
2273 Male, age 74, both hemispheres 22.7
2407 Male, age 75, both hemispheres 22.6
2667 Female, age 75, unknown 22.5
2825 Male, age 18, unknown 22.3
1816 Male, age 51, unknown 21.7
Red nucleus
nTPM: 25.2
1821 Female, age 72, unknown 28.2
1865 Male, age 51, unknown 27.6
1904 Male, age 53, unknown 27.0
2823 Male, age 76, right hemisphere 25.4
1954 Female, age 42, unknown 25.3
2725 Female, age 75, unknown 25.1
2588 Male, age 74, left hemisphere 24.8
2227 Male, age 72, unknown 24.7
2503 Female, age 72, unknown 24.6
2785 Male, age 18, unknown 24.1
2769 Male, age 72, unknown 23.9
2584 Male, age 75, left hemisphere 21.6
Substantia nigra
nTPM: 27.4
2241 Male, age 72, unknown 33.6
1851 Male, age 51, unknown 30.2
1916 Female, age 42, unknown 30.1
2409 Female, age 72, unknown 27.4
2590 Female, age 75, unknown 26.4
1889 Female, age 72, unknown 26.1
2665 Male, age 74, both hemispheres 26.0
1941 Male, age 53, unknown 25.5
2699 Male, age 18, unknown 25.0
2583 Male, age 75, right hemisphere 23.3
Superior colliculus
nTPM: 23.0
2587 Male, age 74, left hemisphere 26.1
2668 Female, age 75, unknown 25.8
1895 Male, age 76, right hemisphere 25.6
1913 Female, age 42, unknown 24.2
2087 Female, age 72, unknown 22.7
2261 Male, age 18, unknown 22.0
1796 Male, age 53, unknown 21.9
1839 Male, age 51, unknown 21.6
1995 Male, age 72, unknown 21.1
2664 Male, age 75, both hemispheres 18.4
Ventral tegmental area
nTPM: 25.5
2410 Female, age 72, unknown 29.4
1915 Female, age 42, unknown 27.4
2218 Male, age 76, both hemispheres 26.3
2223 Female, age 72, unknown 25.3
1942 Male, age 51, unknown 23.7
2021 Male, age 53, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 183

Max nTPM: 17.2
Min nTPM: 6.1
Std nTPM: 1.6
Median nTPM: 9.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 17.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 16.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 14.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 13.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 13.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 13.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 13.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 13.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.7
FF:10158-103A5 76 years, female 36.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.5
Samples: 4

Max nTPM: 35.7
Min nTPM: 32.3
Sample A Female 35.7
Sample B Female 33.6
Sample C Male 32.3
Sample D Male 32.4
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 38.7
Min nTPM: 32.8
Sample A Female 38.7
Sample B Female 32.8
Sample C Male 33.8
Sample D Male 35.6
Periaqueductal gray
nTPM: 31.0
Samples: 3

Max nTPM: 33.2
Min nTPM: 28.6
Sample B Female 31.1
Sample C Male 33.2
Sample D Male 28.6
Superior colliculi
nTPM: 35.2
Samples: 4

Max nTPM: 39.3
Min nTPM: 32.4
Sample A Female 39.3
Sample B Female 32.4
Sample C Male 34.7
Sample D Male 34.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.6
Samples: 4

Max nTPM: 27.5
Min nTPM: 25.6
Sample A Male 27.5
Sample B Male 27.3
Sample C Female 25.6
Sample D Female 25.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70593344 Antisense, RP_050407_04_A04, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo