MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.2 nTPM
HPA Brain:73.6 nTPM
GTEx:25.2 nTPM
FANTOM5:16.2 Scaled Tags Per Million
Pig:300.6 nTPM
Mouse:289.7 nTPM
Allen mouse:8.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.7
1827 Male, age 72, unknown 67.9
2411 Female, age 72, unknown 53.1
2828 Female, age 72, unknown 51.5
1870 Female, age 42, unknown 50.6
1833 Male, age 53, unknown 42.9
2666 Male, age 74, left hemisphere 41.0
1830 Male, age 51, unknown 39.1
2586 Male, age 75, left hemisphere 37.7
2219 Male, age 76, both hemispheres 34.5
2019 Male, age 18, unknown 28.8
Dorsal raphe nucleus
nTPM: 53.7
2298 Female, age 72, unknown 72.6
2047 Male, age 72, unknown 62.3
2750 Male, age 76, both hemispheres 55.3
1828 Male, age 53, unknown 44.9
2016 Female, age 72, unknown 33.3
Inferior colliculus
nTPM: 42.2
2097 Female, age 72, unknown 49.7
1848 Female, age 42, unknown 45.7
2849 Male, age 72, unknown 37.6
1890 Male, age 53, unknown 35.7
Median raphe nucleus
nTPM: 73.6
2220 Male, age 76, midline 73.6
Periaquaductal grey, anterior
nTPM: 62.3
1947 Male, age 18, unknown 70.2
1795 Male, age 51, unknown 60.1
2502 Female, age 75, unknown 56.4
Periaquaductal grey, dorsal
nTPM: 50.5
2850 Male, age 76, both hemispheres 55.1
1831 Male, age 72, unknown 49.6
1840 Male, age 53, unknown 48.9
2464 Female, age 72, unknown 48.3
Periaquaductal grey, lateral
nTPM: 48.1
2053 Male, age 18, unknown 59.9
2140 Male, age 76, both hemispheres 44.7
2272 Male, age 74, both hemispheres 39.6
Pretectal area
nTPM: 56.8
1816 Male, age 51, unknown 78.1
2667 Female, age 75, unknown 65.4
1815 Male, age 53, unknown 63.6
2007 Male, age 72, unknown 61.3
2224 Female, age 72, unknown 60.2
1944 Female, age 72, unknown 59.4
2825 Male, age 18, unknown 55.9
1817 Female, age 42, unknown 55.7
2273 Male, age 74, both hemispheres 46.5
2316 Male, age 76, right hemisphere 40.1
2407 Male, age 75, both hemispheres 38.2
Red nucleus
nTPM: 33.0
2725 Female, age 75, unknown 42.1
1821 Female, age 72, unknown 41.7
1865 Male, age 51, unknown 38.9
2503 Female, age 72, unknown 38.5
1954 Female, age 42, unknown 37.0
1904 Male, age 53, unknown 30.1
2588 Male, age 74, left hemisphere 30.1
2785 Male, age 18, unknown 30.1
2823 Male, age 76, right hemisphere 28.5
2227 Male, age 72, unknown 27.0
2769 Male, age 72, unknown 27.0
2584 Male, age 75, left hemisphere 24.5
Substantia nigra
nTPM: 42.0
1916 Female, age 42, unknown 76.4
1889 Female, age 72, unknown 51.3
1941 Male, age 53, unknown 51.3
2241 Male, age 72, unknown 46.0
1851 Male, age 51, unknown 36.5
2409 Female, age 72, unknown 34.1
2665 Male, age 74, both hemispheres 34.1
2590 Female, age 75, unknown 32.0
2699 Male, age 18, unknown 29.5
2583 Male, age 75, right hemisphere 28.7
Superior colliculus
nTPM: 48.7
2261 Male, age 18, unknown 72.5
2087 Female, age 72, unknown 57.9
1796 Male, age 53, unknown 55.1
2664 Male, age 75, both hemispheres 48.1
1839 Male, age 51, unknown 46.9
2587 Male, age 74, left hemisphere 44.3
1895 Male, age 76, right hemisphere 44.2
2668 Female, age 75, unknown 43.1
1913 Female, age 42, unknown 42.4
1995 Male, age 72, unknown 32.5
Ventral tegmental area
nTPM: 47.5
2410 Female, age 72, unknown 55.0
2223 Female, age 72, unknown 53.9
2218 Male, age 76, both hemispheres 49.2
1915 Female, age 42, unknown 48.7
2021 Male, age 53, unknown 42.3
1942 Male, age 51, unknown 35.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.2
Samples: 183

Max nTPM: 74.7
Min nTPM: 8.9
Std nTPM: 12.0
Median nTPM: 23.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 74.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 72.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 64.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 59.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 58.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 51.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 51.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 50.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 49.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 48.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.2
FF:10158-103A5 76 years, female 16.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 300.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 230.0
Samples: 4

Max nTPM: 321.0
Min nTPM: 156.7
Sample A Female 321.0
Sample B Female 156.7
Sample C Male 233.7
Sample D Male 208.5
Midbrain
nTPM: 300.6
Samples: 4

Max nTPM: 529.5
Min nTPM: 199.0
Sample A Female 529.5
Sample B Female 266.1
Sample C Male 207.6
Sample D Male 199.0
Periaqueductal gray
nTPM: 233.2
Samples: 3

Max nTPM: 255.1
Min nTPM: 213.4
Sample B Female 231.0
Sample C Male 255.1
Sample D Male 213.4
Superior colliculi
nTPM: 177.7
Samples: 4

Max nTPM: 217.7
Min nTPM: 124.4
Sample A Female 180.8
Sample B Female 124.4
Sample C Male 187.8
Sample D Male 217.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 289.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 289.7
Samples: 4

Max nTPM: 299.6
Min nTPM: 280.8
Sample A Male 291.7
Sample B Male 280.8
Sample C Female 286.6
Sample D Female 299.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
80517057 Antisense, RP_071128_03_B12, Mouse strain C57BL/6J (56 days, male) 8.7
1745 Antisense, RP_040526_02_D06, Mouse strain C57BL/6J (56 days, male) 8.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo