MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.9 nTPM
HPA Brain:37.3 nTPM
GTEx:29.9 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:37.9 nTPM
Mouse:6.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2586 Male, age 75, left hemisphere 36.5
2828 Female, age 72, unknown 31.1
2666 Male, age 74, left hemisphere 26.1
1827 Male, age 72, unknown 23.8
1870 Female, age 42, unknown 23.7
1833 Male, age 53, unknown 21.2
2411 Female, age 72, unknown 20.8
1830 Male, age 51, unknown 20.3
2019 Male, age 18, unknown 18.5
2219 Male, age 76, both hemispheres 16.3
Dorsal raphe nucleus
nTPM: 25.0
2016 Female, age 72, unknown 26.7
2298 Female, age 72, unknown 26.5
1828 Male, age 53, unknown 26.0
2047 Male, age 72, unknown 23.5
2750 Male, age 76, both hemispheres 22.3
Inferior colliculus
nTPM: 25.3
1890 Male, age 53, unknown 29.2
2097 Female, age 72, unknown 26.3
2849 Male, age 72, unknown 23.9
1848 Female, age 42, unknown 21.7
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Periaquaductal grey, anterior
nTPM: 37.3
1947 Male, age 18, unknown 44.3
1795 Male, age 51, unknown 34.4
2502 Female, age 75, unknown 33.2
Periaquaductal grey, dorsal
nTPM: 28.1
2850 Male, age 76, both hemispheres 32.7
1831 Male, age 72, unknown 28.0
1840 Male, age 53, unknown 28.0
2464 Female, age 72, unknown 23.5
Periaquaductal grey, lateral
nTPM: 27.8
2140 Male, age 76, both hemispheres 32.1
2053 Male, age 18, unknown 27.2
2272 Male, age 74, both hemispheres 24.2
Pretectal area
nTPM: 25.1
1944 Female, age 72, unknown 28.6
1815 Male, age 53, unknown 27.4
1816 Male, age 51, unknown 27.4
1817 Female, age 42, unknown 27.4
2273 Male, age 74, both hemispheres 24.7
2825 Male, age 18, unknown 24.6
2007 Male, age 72, unknown 24.0
2667 Female, age 75, unknown 23.8
2224 Female, age 72, unknown 23.2
2316 Male, age 76, right hemisphere 22.9
2407 Male, age 75, both hemispheres 22.8
Red nucleus
nTPM: 26.1
1904 Male, age 53, unknown 28.7
1865 Male, age 51, unknown 27.7
1954 Female, age 42, unknown 27.6
2503 Female, age 72, unknown 27.3
2769 Male, age 72, unknown 27.0
2227 Male, age 72, unknown 26.8
2725 Female, age 75, unknown 26.8
1821 Female, age 72, unknown 26.5
2584 Male, age 75, left hemisphere 26.2
2588 Male, age 74, left hemisphere 25.1
2823 Male, age 76, right hemisphere 22.3
2785 Male, age 18, unknown 21.4
Substantia nigra
nTPM: 25.9
2665 Male, age 74, both hemispheres 32.1
2583 Male, age 75, right hemisphere 28.4
1851 Male, age 51, unknown 28.0
2590 Female, age 75, unknown 28.0
2699 Male, age 18, unknown 26.0
2409 Female, age 72, unknown 24.9
1916 Female, age 42, unknown 24.8
1889 Female, age 72, unknown 24.3
2241 Male, age 72, unknown 23.8
1941 Male, age 53, unknown 18.9
Superior colliculus
nTPM: 27.1
2261 Male, age 18, unknown 34.7
1995 Male, age 72, unknown 30.5
2664 Male, age 75, both hemispheres 30.5
1913 Female, age 42, unknown 28.0
2668 Female, age 75, unknown 28.0
1796 Male, age 53, unknown 27.1
2087 Female, age 72, unknown 26.7
2587 Male, age 74, left hemisphere 25.3
1839 Male, age 51, unknown 22.6
1895 Male, age 76, right hemisphere 17.5
Ventral tegmental area
nTPM: 25.7
1942 Male, age 51, unknown 29.4
2021 Male, age 53, unknown 25.5
2223 Female, age 72, unknown 25.2
2218 Male, age 76, both hemispheres 25.1
1915 Female, age 42, unknown 25.0
2410 Female, age 72, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.9
Samples: 183

Max nTPM: 68.8
Min nTPM: 11.5
Std nTPM: 8.7
Median nTPM: 28.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 68.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 59.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 58.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 56.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 53.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 51.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 47.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 47.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 44.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 44.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 44.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.2
FF:10158-103A5 76 years, female 51.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.9
Samples: 4

Max nTPM: 46.3
Min nTPM: 33.8
Sample A Female 37.2
Sample B Female 46.3
Sample C Male 33.8
Sample D Male 34.4
Midbrain
nTPM: 31.3
Samples: 4

Max nTPM: 46.5
Min nTPM: 17.4
Sample A Female 46.5
Sample B Female 31.3
Sample C Male 29.9
Sample D Male 17.4
Periaqueductal gray
nTPM: 27.8
Samples: 3

Max nTPM: 29.5
Min nTPM: 25.9
Sample B Female 29.5
Sample C Male 28.0
Sample D Male 25.9
Superior colliculi
nTPM: 35.6
Samples: 4

Max nTPM: 44.3
Min nTPM: 29.7
Sample A Female 33.6
Sample B Female 44.3
Sample C Male 34.6
Sample D Male 29.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.1
Sample A Male 6.7
Sample B Male 6.4
Sample C Female 5.1
Sample D Female 6.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
79393541 Antisense, RP_071018_02_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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