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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:345.5 nTPM
FANTOM5:555.2 Scaled Tags Per Million
Pig:1276.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002989Antibody HPA003020Antibody CAB002306
Glial cells LowLowHigh
Neuronal cells LowNot detected-






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

345.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 345.5
Samples: 300

Max nTPM: 1570.5
Min nTPM: 88.0
Std nTPM: 161.1
Median nTPM: 310.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1570.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 851.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 831.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 824.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 779.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 746.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 711.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 703.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 681.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 656.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 653.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 651.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 650.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 648.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 642.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 626.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 613.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 611.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 594.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 591.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 589.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 588.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 578.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 564.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 563.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 563.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 562.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 560.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 554.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 552.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 546.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 543.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 541.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 536.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 533.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 532.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 531.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 530.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 526.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 526.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 523.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 521.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 521.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 519.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 515.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 499.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 499.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 496.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 495.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 495.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 495.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 492.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 487.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 478.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 468.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 468.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 466.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 464.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 461.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 457.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 457.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 457.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 454.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 448.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 442.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 442.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 441.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 439.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 439.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 439.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 438.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 436.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 435.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 433.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 431.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 430.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 426.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 426.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 426.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 423.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 419.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 416.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 407.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 403.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 402.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 397.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 395.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 394.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 393.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 391.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 385.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 385.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 384.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 382.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 381.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 381.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 380.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 378.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 378.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 371.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 369.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 368.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 368.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 367.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 367.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 366.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 365.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 361.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 360.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 357.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 356.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 352.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 352.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 352.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 351.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 351.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 350.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 349.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 347.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 346.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 346.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 345.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 344.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 340.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 340.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 337.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 336.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 335.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 333.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 333.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 330.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 330.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 329.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 329.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 329.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 328.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 326.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 326.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 326.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 325.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 324.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 323.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 321.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 320.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 318.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 317.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 315.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 311.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 310.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 310.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 309.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 309.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 308.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 308.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 308.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 307.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 307.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 307.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 304.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 304.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 303.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 302.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 301.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 300.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 299.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 297.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 297.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 295.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 294.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 293.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 293.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 292.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 289.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 289.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 288.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 286.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 285.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 285.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 283.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 283.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 281.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 281.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 279.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 279.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 272.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 272.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 270.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 269.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 268.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 268.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 267.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 267.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 267.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 267.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 266.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 264.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 263.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 262.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 262.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 261.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 261.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 258.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 258.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 258.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 258.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 256.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 254.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 254.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 253.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 253.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 252.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 251.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 250.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 250.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 249.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 248.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 245.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 244.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 243.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 236.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 235.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 235.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 235.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 235.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 233.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 233.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 233.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 232.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 232.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 231.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 229.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 226.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 225.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 224.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 223.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 223.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 223.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 221.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 221.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 220.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 219.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 219.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 218.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 217.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 216.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 215.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 215.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 214.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 212.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 211.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 211.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 210.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 210.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 208.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 208.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 207.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 204.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 203.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 202.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 202.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 199.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 199.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 196.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 195.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 193.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 193.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 191.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 190.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 190.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 189.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 189.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 184.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 178.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 178.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 174.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 171.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 166.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 164.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 164.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 164.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 160.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 157.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 154.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 153.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 151.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 150.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 147.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 146.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 144.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 143.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 141.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 135.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 130.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 130.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 125.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 115.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 111.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 110.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 89.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 88.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

555.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 555.2
FF:10164-103B2 76 years, female 555.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1276.1
Pig sample Sample description nTPM
Caudate
nTPM: 1276.1
Samples: 4

Max nTPM: 1631.2
Min nTPM: 996.3
Sample A Female 996.3
Sample B Female 1253.6
Sample C Male 1631.2
Sample D Male 1223.3

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