MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.7 nTPM
HPA Brain:70.5 nTPM
GTEx:58.7 nTPM
FANTOM5:122.9 Scaled Tags Per Million
Pig:70.7 nTPM
Mouse:121.6 nTPM
Allen mouse:14.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 70.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.1
1870 Female, age 42, unknown 60.1
1833 Male, age 53, unknown 58.7
2666 Male, age 74, left hemisphere 58.7
1827 Male, age 72, unknown 57.6
1830 Male, age 51, unknown 57.2
2219 Male, age 76, both hemispheres 56.3
2828 Female, age 72, unknown 51.4
2019 Male, age 18, unknown 47.4
2586 Male, age 75, left hemisphere 47.1
2411 Female, age 72, unknown 46.3
Dorsal raphe nucleus
nTPM: 55.1
2016 Female, age 72, unknown 67.5
1828 Male, age 53, unknown 55.4
2047 Male, age 72, unknown 53.4
2298 Female, age 72, unknown 52.3
2750 Male, age 76, both hemispheres 46.9
Inferior colliculus
nTPM: 56.5
2849 Male, age 72, unknown 74.2
1848 Female, age 42, unknown 55.7
1890 Male, age 53, unknown 53.8
2097 Female, age 72, unknown 42.4
Median raphe nucleus
nTPM: 62.7
2220 Male, age 76, midline 62.7
Periaquaductal grey, anterior
nTPM: 51.1
1947 Male, age 18, unknown 55.6
1795 Male, age 51, unknown 52.7
2502 Female, age 75, unknown 45.0
Periaquaductal grey, dorsal
nTPM: 69.5
2850 Male, age 76, both hemispheres 113.7
1840 Male, age 53, unknown 60.8
1831 Male, age 72, unknown 56.9
2464 Female, age 72, unknown 46.4
Periaquaductal grey, lateral
nTPM: 70.5
2272 Male, age 74, both hemispheres 78.7
2140 Male, age 76, both hemispheres 76.6
2053 Male, age 18, unknown 56.2
Pretectal area
nTPM: 56.3
2273 Male, age 74, both hemispheres 65.8
1815 Male, age 53, unknown 60.9
2407 Male, age 75, both hemispheres 59.7
2224 Female, age 72, unknown 59.5
1817 Female, age 42, unknown 58.3
2825 Male, age 18, unknown 57.3
2667 Female, age 75, unknown 56.1
1816 Male, age 51, unknown 52.1
1944 Female, age 72, unknown 51.7
2007 Male, age 72, unknown 51.3
2316 Male, age 76, right hemisphere 46.7
Red nucleus
nTPM: 56.1
2725 Female, age 75, unknown 78.9
1865 Male, age 51, unknown 63.0
1904 Male, age 53, unknown 57.0
1954 Female, age 42, unknown 56.1
2503 Female, age 72, unknown 55.9
2823 Male, age 76, right hemisphere 54.9
2584 Male, age 75, left hemisphere 53.2
1821 Female, age 72, unknown 52.2
2785 Male, age 18, unknown 51.9
2769 Male, age 72, unknown 51.4
2227 Male, age 72, unknown 49.7
2588 Male, age 74, left hemisphere 48.8
Substantia nigra
nTPM: 56.3
2699 Male, age 18, unknown 80.7
2665 Male, age 74, both hemispheres 61.3
1889 Female, age 72, unknown 56.7
1916 Female, age 42, unknown 56.7
2583 Male, age 75, right hemisphere 53.9
1941 Male, age 53, unknown 52.7
2590 Female, age 75, unknown 52.1
1851 Male, age 51, unknown 51.6
2241 Male, age 72, unknown 50.9
2409 Female, age 72, unknown 46.0
Superior colliculus
nTPM: 53.4
1995 Male, age 72, unknown 63.1
2587 Male, age 74, left hemisphere 62.1
1913 Female, age 42, unknown 58.3
1895 Male, age 76, right hemisphere 54.5
2664 Male, age 75, both hemispheres 53.4
1839 Male, age 51, unknown 53.1
1796 Male, age 53, unknown 52.1
2261 Male, age 18, unknown 49.3
2668 Female, age 75, unknown 45.1
2087 Female, age 72, unknown 42.7
Ventral tegmental area
nTPM: 52.3
2218 Male, age 76, both hemispheres 59.4
1915 Female, age 42, unknown 56.2
2223 Female, age 72, unknown 53.7
2021 Male, age 53, unknown 50.5
1942 Male, age 51, unknown 48.5
2410 Female, age 72, unknown 45.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.7
Samples: 183

Max nTPM: 94.8
Min nTPM: 41.3
Std nTPM: 9.6
Median nTPM: 56.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 94.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 91.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 89.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 85.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 85.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 83.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 81.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 81.3
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 79.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 79.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 78.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 122.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.9
FF:10158-103A5 76 years, female 122.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 70.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.2
Samples: 4

Max nTPM: 71.5
Min nTPM: 55.6
Sample A Female 66.3
Sample B Female 55.6
Sample C Male 67.3
Sample D Male 71.5
Midbrain
nTPM: 70.7
Samples: 4

Max nTPM: 96.4
Min nTPM: 61.1
Sample A Female 96.4
Sample B Female 61.5
Sample C Male 63.6
Sample D Male 61.1
Periaqueductal gray
nTPM: 61.8
Samples: 3

Max nTPM: 68.6
Min nTPM: 57.6
Sample B Female 59.3
Sample C Male 68.6
Sample D Male 57.6
Superior colliculi
nTPM: 64.9
Samples: 4

Max nTPM: 71.0
Min nTPM: 52.8
Sample A Female 71.0
Sample B Female 52.8
Sample C Male 67.6
Sample D Male 68.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 121.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.6
Samples: 4

Max nTPM: 127.9
Min nTPM: 117.1
Sample A Male 117.1
Sample B Male 121.2
Sample C Female 127.9
Sample D Female 120.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
68443351 Antisense, RP_050111_01_G12, Mouse strain C57BL/6J (56 days, male) 14.3

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