A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
53.8
nTPM
Monaco:
50.8
nTPM
Schmiedel:
13.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.8
HPA sample
nTPM
NK-cell nTPM: 53.8
Samples: 6
Max nTPM: 80.0
Min nTPM: 30.3
P10809_1013
38.4
P10809_1033
48.8
P10809_1052
30.3
P10809_1071
65.8
P10809_1093
80.0
P10809_1103
59.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.8
Monaco sample
nTPM
NK-cell nTPM: 50.8
Samples: 4
Max nTPM: 59.8
Min nTPM: 40.2
RHH5316_R3683
40.2
RHH5224_R3596
59.8
RHH5253_R3625
44.1
RHH5282_R3654
59.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.2
Schmiedel sample id
TPM
NK-cell TPM: 13.2
Samples: 90
Max TPM: 23.7
Min TPM: 7.4
NK_1
23.7
NK_2
23.1
NK_3
22.0
NK_4
21.5
NK_5
21.2
NK_6
20.0
NK_7
19.2
NK_8
18.8
NK_9
18.6
NK_10
18.5
NK_11
18.0
NK_12
17.5
NK_13
17.3
NK_14
17.3
NK_15
17.0
NK_16
16.6
NK_17
16.5
NK_18
16.4
NK_19
16.1
NK_20
16.0
NK_21
15.9
NK_22
15.7
NK_23
15.5
NK_24
15.5
NK_25
15.4
NK_26
15.3
NK_27
15.3
NK_28
14.5
NK_29
14.4
NK_30
14.4
NK_31
14.4
NK_32
13.9
NK_33
13.9
NK_34
13.6
NK_35
12.9
NK_36
12.9
NK_37
12.8
NK_38
12.8
NK_39
12.7
NK_40
12.6
NK_41
12.5
NK_42
12.3
NK_43
12.3
NK_44
12.3
NK_45
12.2
NK_46
12.2
NK_47
12.1
NK_48
12.0
NK_49
12.0
NK_50
11.9
NK_51
11.8
NK_52
11.8
NK_53
11.7
NK_54
11.6
NK_55
11.6
NK_56
11.4
NK_57
11.4
NK_58
11.1
NK_59
11.1
NK_60
11.1
NK_61
11.0
NK_62
10.9
NK_63
10.8
NK_64
10.7
NK_65
10.7
NK_66
10.6
NK_67
10.5
NK_68
10.5
NK_69
10.4
NK_70
10.3
NK_71
10.3
NK_72
10.2
NK_73
10.1
NK_74
10.1
NK_75
10.1
NK_76
9.8
NK_77
9.6
NK_78
9.6
NK_79
9.4
NK_80
9.4
NK_81
9.3
NK_82
9.3
NK_83
9.1
NK_84
8.8
NK_85
8.7
NK_86
8.6
NK_87
8.5
NK_88
8.2
NK_89
7.5
NK_90
7.4
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