A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
513.7
nTPM
Monaco:
879.0
nTPM
Schmiedel:
126.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
513.7
HPA sample
nTPM
Classical monocyte nTPM: 513.7
Samples: 6
Max nTPM: 589.0
Min nTPM: 406.5
P10809_1003
548.5
P10809_1020
567.3
P10809_1039
589.0
P10809_1058
406.5
P10809_1080
486.1
P10809_1107
484.5
Intermediate monocyte nTPM: 355.0
Samples: 6
Max nTPM: 425.6
Min nTPM: 294.7
P10809_1004
298.3
P10809_1023
368.3
P10809_1042
336.0
P10809_1061
407.0
P10809_1081
294.7
P10809_1108
425.6
Non-classical monocyte nTPM: 330.1
Samples: 5
Max nTPM: 397.7
Min nTPM: 242.1
P10809_1005
277.9
P10809_1053
338.1
P10809_1072
397.7
P10809_1082
242.1
P10809_1109
394.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
879.0
Monaco sample
nTPM
Classical monocyte nTPM: 879.0
Samples: 4
Max nTPM: 928.9
Min nTPM: 803.8
RHH5313_R3680
803.8
RHH5221_R3593
896.1
RHH5250_R3622
887.3
RHH5279_R3651
928.9
Intermediate monocyte nTPM: 509.1
Samples: 4
Max nTPM: 581.2
Min nTPM: 404.5
RHH5314_R3681
577.4
RHH5222_R3594
404.5
RHH5251_R3623
473.2
RHH5280_R3652
581.2
Non-classical monocyte nTPM: 465.5
Samples: 4
Max nTPM: 530.7
Min nTPM: 313.7
RHH5315_R3682
522.0
RHH5223_R3595
313.7
RHH5252_R3624
495.6
RHH5281_R3653
530.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.2
Schmiedel sample id
TPM
Classical monocyte TPM: 126.2
Samples: 91
Max TPM: 148.4
Min TPM: 105.3
MONOCYTES_1
148.4
MONOCYTES_2
146.2
MONOCYTES_3
145.9
MONOCYTES_4
144.8
MONOCYTES_5
144.7
MONOCYTES_6
142.1
MONOCYTES_7
141.0
MONOCYTES_8
140.3
MONOCYTES_9
139.9
MONOCYTES_10
139.4
MONOCYTES_11
138.3
MONOCYTES_12
138.2
MONOCYTES_13
137.4
MONOCYTES_14
136.5
MONOCYTES_15
134.8
MONOCYTES_16
134.8
MONOCYTES_17
134.4
MONOCYTES_18
134.3
MONOCYTES_19
133.2
MONOCYTES_20
132.7
MONOCYTES_21
132.4
MONOCYTES_22
132.0
MONOCYTES_23
132.0
MONOCYTES_24
131.9
MONOCYTES_25
130.6
MONOCYTES_26
130.3
MONOCYTES_27
129.7
MONOCYTES_28
128.8
MONOCYTES_29
128.6
MONOCYTES_30
128.5
MONOCYTES_31
128.4
MONOCYTES_32
128.3
MONOCYTES_33
128.3
MONOCYTES_34
128.2
MONOCYTES_35
128.1
MONOCYTES_36
127.9
MONOCYTES_37
127.4
MONOCYTES_38
127.1
MONOCYTES_39
126.8
MONOCYTES_40
126.7
MONOCYTES_41
126.0
MONOCYTES_42
126.0
MONOCYTES_43
125.9
MONOCYTES_44
125.8
MONOCYTES_45
125.8
MONOCYTES_46
125.5
MONOCYTES_47
125.3
MONOCYTES_48
125.1
MONOCYTES_49
125.0
MONOCYTES_50
124.6
MONOCYTES_51
124.2
MONOCYTES_52
123.3
MONOCYTES_53
123.3
MONOCYTES_54
123.2
MONOCYTES_55
122.9
MONOCYTES_56
122.5
MONOCYTES_57
122.3
MONOCYTES_58
121.7
MONOCYTES_59
121.5
MONOCYTES_60
120.9
MONOCYTES_61
120.8
MONOCYTES_62
120.6
MONOCYTES_63
120.5
MONOCYTES_64
120.2
MONOCYTES_65
120.2
MONOCYTES_66
119.7
MONOCYTES_67
119.7
MONOCYTES_68
119.6
MONOCYTES_69
119.2
MONOCYTES_70
119.1
MONOCYTES_71
119.0
MONOCYTES_72
118.8
MONOCYTES_73
118.3
MONOCYTES_74
118.2
MONOCYTES_75
118.1
MONOCYTES_76
117.9
MONOCYTES_77
117.9
MONOCYTES_78
117.5
MONOCYTES_79
117.1
MONOCYTES_80
117.1
MONOCYTES_81
116.9
MONOCYTES_82
116.5
MONOCYTES_83
115.9
MONOCYTES_84
115.7
MONOCYTES_85
115.1
MONOCYTES_86
114.8
MONOCYTES_87
113.9
MONOCYTES_88
113.8
MONOCYTES_89
111.4
MONOCYTES_90
111.3
MONOCYTES_91
105.3
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Non-classical monocyte TPM: 80.6
Samples: 90
Max TPM: 102.4
Min TPM: 62.4
M2_1
102.4
M2_2
99.6
M2_3
96.2
M2_4
95.6
M2_5
93.7
M2_6
92.3
M2_7
91.0
M2_8
90.7
M2_9
90.5
M2_10
89.3
M2_11
88.9
M2_12
88.1
M2_13
87.1
M2_14
86.4
M2_15
86.2
M2_16
86.2
M2_17
85.7
M2_18
85.7
M2_19
85.2
M2_20
85.0
M2_21
84.9
M2_22
84.7
M2_23
84.6
M2_24
84.6
M2_25
84.4
M2_26
84.1
M2_27
84.0
M2_28
83.8
M2_29
83.7
M2_30
83.5
M2_31
82.4
M2_32
82.3
M2_33
82.3
M2_34
81.9
M2_35
81.8
M2_36
81.6
M2_37
81.6
M2_38
81.3
M2_39
81.3
M2_40
81.0
M2_41
80.9
M2_42
80.9
M2_43
80.8
M2_44
80.7
M2_45
80.6
M2_46
80.5
M2_47
80.0
M2_48
79.7
M2_49
79.6
M2_50
79.3
M2_51
79.2
M2_52
79.2
M2_53
79.1
M2_54
78.5
M2_55
78.2
M2_56
78.0
M2_57
78.0
M2_58
77.6
M2_59
77.4
M2_60
77.4
M2_61
77.2
M2_62
76.7
M2_63
76.6
M2_64
76.6
M2_65
76.5
M2_66
76.3
M2_67
76.0
M2_68
75.7
M2_69
75.6
M2_70
75.6
M2_71
75.4
M2_72
74.9
M2_73
74.6
M2_74
74.5
M2_75
74.4
M2_76
74.3
M2_77
74.3
M2_78
73.6
M2_79
73.2
M2_80
73.0
M2_81
72.2
M2_82
72.0
M2_83
71.9
M2_84
71.2
M2_85
70.9
M2_86
70.8
M2_87
69.4
M2_88
67.4
M2_89
67.1
M2_90
62.4
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