MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.3 nTPM
HPA Brain:53.0 nTPM
GTEx:28.3 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:46.9 nTPM
Mouse:32.6 nTPM
Allen mouse:9.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.7
2586 Male, age 75, left hemisphere 59.8
2019 Male, age 18, unknown 56.5
2666 Male, age 74, left hemisphere 53.6
1827 Male, age 72, unknown 48.9
2828 Female, age 72, unknown 43.3
2219 Male, age 76, both hemispheres 41.9
2411 Female, age 72, unknown 38.7
1870 Female, age 42, unknown 37.5
1833 Male, age 53, unknown 34.9
1830 Male, age 51, unknown 31.9
Dorsal raphe nucleus
nTPM: 45.8
2047 Male, age 72, unknown 53.8
2298 Female, age 72, unknown 52.1
1828 Male, age 53, unknown 50.4
2750 Male, age 76, both hemispheres 36.6
2016 Female, age 72, unknown 36.2
Inferior colliculus
nTPM: 46.8
2097 Female, age 72, unknown 56.3
1890 Male, age 53, unknown 45.0
2849 Male, age 72, unknown 43.8
1848 Female, age 42, unknown 42.0
Median raphe nucleus
nTPM: 48.9
2220 Male, age 76, midline 48.9
Periaquaductal grey, anterior
nTPM: 50.9
1795 Male, age 51, unknown 59.1
2502 Female, age 75, unknown 50.6
1947 Male, age 18, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 43.5
1831 Male, age 72, unknown 45.4
2464 Female, age 72, unknown 45.3
1840 Male, age 53, unknown 42.3
2850 Male, age 76, both hemispheres 40.9
Periaquaductal grey, lateral
nTPM: 41.4
2272 Male, age 74, both hemispheres 44.8
2140 Male, age 76, both hemispheres 41.6
2053 Male, age 18, unknown 37.7
Pretectal area
nTPM: 53.0
1816 Male, age 51, unknown 71.7
2007 Male, age 72, unknown 68.8
1944 Female, age 72, unknown 64.9
1817 Female, age 42, unknown 64.5
2224 Female, age 72, unknown 50.8
1815 Male, age 53, unknown 50.7
2667 Female, age 75, unknown 45.7
2273 Male, age 74, both hemispheres 43.3
2407 Male, age 75, both hemispheres 43.2
2825 Male, age 18, unknown 41.1
2316 Male, age 76, right hemisphere 38.0
Red nucleus
nTPM: 37.5
2785 Male, age 18, unknown 52.7
2584 Male, age 75, left hemisphere 41.9
2725 Female, age 75, unknown 38.7
1954 Female, age 42, unknown 37.7
2503 Female, age 72, unknown 36.9
2588 Male, age 74, left hemisphere 36.6
1821 Female, age 72, unknown 36.3
2769 Male, age 72, unknown 36.1
2227 Male, age 72, unknown 35.6
2823 Male, age 76, right hemisphere 33.2
1865 Male, age 51, unknown 32.7
1904 Male, age 53, unknown 31.0
Substantia nigra
nTPM: 41.9
1941 Male, age 53, unknown 55.8
2665 Male, age 74, both hemispheres 51.7
1889 Female, age 72, unknown 49.9
1916 Female, age 42, unknown 45.2
1851 Male, age 51, unknown 41.6
2583 Male, age 75, right hemisphere 40.7
2590 Female, age 75, unknown 37.7
2699 Male, age 18, unknown 35.5
2241 Male, age 72, unknown 33.6
2409 Female, age 72, unknown 27.0
Superior colliculus
nTPM: 46.2
2664 Male, age 75, both hemispheres 59.4
2087 Female, age 72, unknown 58.4
2668 Female, age 75, unknown 53.5
1796 Male, age 53, unknown 49.3
2261 Male, age 18, unknown 46.5
1895 Male, age 76, right hemisphere 41.9
1839 Male, age 51, unknown 41.6
2587 Male, age 74, left hemisphere 41.2
1913 Female, age 42, unknown 36.4
1995 Male, age 72, unknown 34.0
Ventral tegmental area
nTPM: 44.2
2218 Male, age 76, both hemispheres 49.4
1942 Male, age 51, unknown 45.5
1915 Female, age 42, unknown 45.1
2223 Female, age 72, unknown 44.9
2021 Male, age 53, unknown 43.4
2410 Female, age 72, unknown 37.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.3
Samples: 183

Max nTPM: 80.3
Min nTPM: 10.8
Std nTPM: 10.2
Median nTPM: 27.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 80.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 72.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 68.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 64.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 58.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 57.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 49.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 48.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 47.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 44.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.2
Samples: 4

Max nTPM: 47.8
Min nTPM: 20.7
Sample A Female 47.8
Sample B Female 32.7
Sample C Male 47.6
Sample D Male 20.7
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 59.2
Min nTPM: 30.0
Sample A Female 39.0
Sample B Female 30.0
Sample C Male 46.1
Sample D Male 59.2
Periaqueductal gray
nTPM: 33.5
Samples: 3

Max nTPM: 42.3
Min nTPM: 28.2
Sample B Female 28.2
Sample C Male 42.3
Sample D Male 29.9
Superior colliculi
nTPM: 46.9
Samples: 4

Max nTPM: 55.4
Min nTPM: 38.8
Sample A Female 55.4
Sample B Female 49.8
Sample C Male 38.8
Sample D Male 43.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 36.4
Min nTPM: 27.3
Sample A Male 36.4
Sample B Male 35.0
Sample C Female 27.3
Sample D Female 31.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
70928198 Antisense, RP_050725_01_B12, Mouse strain C57BL/6J (56 days, male) 10.0
75694702 Antisense, RP_060518_03_H01, Mouse strain C57BL/6J (56 days, male) 8.5

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