MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.0 nTPM
HPA Brain:93.6 nTPM
GTEx:29.0 nTPM
FANTOM5:227.8 Scaled Tags Per Million
Pig:23.5 nTPM
Mouse:10.1 nTPM
Allen mouse:2.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.5
2586 Male, age 75, left hemisphere 100.3
2828 Female, age 72, unknown 82.5
2019 Male, age 18, unknown 77.8
1827 Male, age 72, unknown 77.5
1870 Female, age 42, unknown 72.4
2666 Male, age 74, left hemisphere 69.4
1833 Male, age 53, unknown 69.3
1830 Male, age 51, unknown 59.9
2219 Male, age 76, both hemispheres 59.0
2411 Female, age 72, unknown 57.5
Dorsal raphe nucleus
nTPM: 85.2
1828 Male, age 53, unknown 98.5
2016 Female, age 72, unknown 96.5
2047 Male, age 72, unknown 86.0
2750 Male, age 76, both hemispheres 76.6
2298 Female, age 72, unknown 68.4
Inferior colliculus
nTPM: 89.0
1890 Male, age 53, unknown 96.7
2849 Male, age 72, unknown 91.5
1848 Female, age 42, unknown 88.7
2097 Female, age 72, unknown 79.1
Median raphe nucleus
nTPM: 93.6
2220 Male, age 76, midline 93.6
Periaquaductal grey, anterior
nTPM: 72.1
1795 Male, age 51, unknown 92.5
1947 Male, age 18, unknown 62.8
2502 Female, age 75, unknown 60.9
Periaquaductal grey, dorsal
nTPM: 77.0
2850 Male, age 76, both hemispheres 93.0
1831 Male, age 72, unknown 74.4
2464 Female, age 72, unknown 72.2
1840 Male, age 53, unknown 68.6
Periaquaductal grey, lateral
nTPM: 89.4
2140 Male, age 76, both hemispheres 100.0
2272 Male, age 74, both hemispheres 90.0
2053 Male, age 18, unknown 78.2
Pretectal area
nTPM: 85.6
2667 Female, age 75, unknown 106.9
2316 Male, age 76, right hemisphere 96.5
2407 Male, age 75, both hemispheres 89.5
2273 Male, age 74, both hemispheres 88.3
1817 Female, age 42, unknown 85.9
1816 Male, age 51, unknown 85.8
1944 Female, age 72, unknown 83.2
2224 Female, age 72, unknown 82.7
2007 Male, age 72, unknown 78.3
2825 Male, age 18, unknown 72.7
1815 Male, age 53, unknown 72.4
Red nucleus
nTPM: 77.0
2725 Female, age 75, unknown 94.4
2823 Male, age 76, right hemisphere 90.1
2785 Male, age 18, unknown 85.1
1954 Female, age 42, unknown 84.7
2769 Male, age 72, unknown 81.3
2227 Male, age 72, unknown 80.5
2584 Male, age 75, left hemisphere 77.8
1865 Male, age 51, unknown 72.0
2588 Male, age 74, left hemisphere 71.8
1821 Female, age 72, unknown 64.2
1904 Male, age 53, unknown 63.1
2503 Female, age 72, unknown 59.2
Substantia nigra
nTPM: 70.3
2699 Male, age 18, unknown 88.4
1889 Female, age 72, unknown 75.2
2665 Male, age 74, both hemispheres 72.2
1851 Male, age 51, unknown 71.6
1941 Male, age 53, unknown 69.9
1916 Female, age 42, unknown 69.3
2590 Female, age 75, unknown 68.4
2583 Male, age 75, right hemisphere 66.6
2409 Female, age 72, unknown 63.8
2241 Male, age 72, unknown 58.0
Superior colliculus
nTPM: 74.6
1913 Female, age 42, unknown 93.7
1796 Male, age 53, unknown 85.1
2087 Female, age 72, unknown 80.9
1995 Male, age 72, unknown 77.9
1839 Male, age 51, unknown 75.2
2261 Male, age 18, unknown 72.4
2664 Male, age 75, both hemispheres 71.2
1895 Male, age 76, right hemisphere 68.2
2587 Male, age 74, left hemisphere 64.6
2668 Female, age 75, unknown 56.4
Ventral tegmental area
nTPM: 71.5
2218 Male, age 76, both hemispheres 88.1
2021 Male, age 53, unknown 79.3
1915 Female, age 42, unknown 70.2
2223 Female, age 72, unknown 66.0
1942 Male, age 51, unknown 65.4
2410 Female, age 72, unknown 60.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.0
Samples: 183

Max nTPM: 164.0
Min nTPM: 9.6
Std nTPM: 20.8
Median nTPM: 22.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 164.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 114.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 114.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 88.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 83.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 83.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 79.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 75.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 75.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 67.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 65.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 227.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 227.8
FF:10158-103A5 76 years, female 227.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.4
Samples: 4

Max nTPM: 22.1
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 22.1
Sample C Male 20.4
Sample D Male 21.2
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 24.5
Min nTPM: 18.8
Sample A Female 21.1
Sample B Female 19.6
Sample C Male 18.8
Sample D Male 24.5
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 25.5
Min nTPM: 20.7
Sample B Female 20.7
Sample C Male 25.5
Sample D Male 21.4
Superior colliculi
nTPM: 23.5
Samples: 4

Max nTPM: 26.5
Min nTPM: 21.5
Sample A Female 26.5
Sample B Female 22.2
Sample C Male 21.5
Sample D Male 23.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 13.1
Min nTPM: 8.8
Sample A Male 9.1
Sample B Male 8.8
Sample C Female 13.1
Sample D Female 9.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
75651139 Antisense, RP_060518_01_A02, Mouse strain C57BL/6J (56 days, male) 3.0
68745474 Antisense, RP_050210_02_A07, Mouse strain C57BL/6J (56 days, male) 2.6

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