On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
97.6
nTPM
HPA Brain:
54.3
nTPM
GTEx:
97.6
nTPM
FANTOM5:
28.4
Scaled Tags Per Million
Macaque:
10.2
nTPM
Mouse:
4.5
nTPM
Rat:
21.2
nTPM
Pig:
42.2
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
29134
Sample
Intensity
Spinal cord_01
28151
Spinal cord_02
24319
Spinal cord_03
37299
Spinal cord_04
35165
Spinal cord_05
30116
Spinal cord_06
14829
Spinal cord_07
22981
Spinal cord_08
30422
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.3
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 47.3
2819
Male, age 47, both hemispheres
54.2
2818
Female, age 79, both hemispheres
47.6
2193
Male, age 75, both hemispheres
44.0
2734
Male, age 80, both hemispheres
43.3
Cervical spinal cord, central gray nTPM: 51.3
2565
Male, age 75, midline
56.2
2816
Male, age 47, midline
52.3
1981
Female, age 72, midline
52.1
2048
Male, age 55, midline
51.3
2194
Female, age 79, both hemispheres
44.9
Cervical spinal cord, dorsal horn nTPM: 47.4
2721
Male, age 90, both hemispheres
65.6
2297
Male, age 75, both hemispheres
48.1
2173
Female, age 72, unknown
45.9
1877
Male, age 55, unknown
45.8
2069
Male, age 47, both hemispheres
40.7
2296
Male, age 66, both hemispheres
38.2
Cervical spinal cord, ventral horn nTPM: 54.3
2098
Female, age 72, unknown
76.5
2809
Male, age 90, both hemispheres
56.9
2295
Male, age 66, both hemispheres
54.8
2480
Male, age 75, both hemispheres
53.2
2820
Female, age 79, both hemispheres
42.9
2068
Male, age 55, unknown
41.5
Dorsal funiculus (white matter) nTPM: 44.1
2064
Female, age 79, both hemispheres
55.0
2812
Male, age 66, both hemispheres
45.9
2128
Male, age 75, both hemispheres
43.6
2817
Male, age 47, both hemispheres
42.5
2810
Male, age 90, both hemispheres
33.4
Lateral funiculus (white matter) nTPM: 42.5
2294
Male, age 66, both hemispheres
47.5
2094
Female, age 79, both hemispheres
46.1
2192
Male, age 75, both hemispheres
39.8
2099
Male, age 90, both hemispheres
36.5
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
97.6
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 97.6
Samples: 204
Max nTPM: 257.9
Min nTPM: 33.7
Std nTPM: 32.3
Median nTPM: 95.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
257.9
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
230.2
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
199.4
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
171.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
169.1
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
167.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
166.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
162.6
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
150.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
148.9
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
148.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
146.5
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
144.4
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
143.1
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
143.0
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
140.4
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
140.3
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
139.1
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
138.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
136.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
136.0
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
135.8
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
135.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
135.1
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
133.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
131.4
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
130.7
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
130.5
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
129.5
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
129.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
128.6
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
127.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
126.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
125.7
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
124.5
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
124.2
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
121.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
121.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
121.2
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
120.5
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
120.4
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
120.1
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
119.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
118.9
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
118.9
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
118.7
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
117.2
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
116.6
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
116.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
115.4
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
114.8
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
114.5
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
114.5
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
113.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
113.0
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
112.0
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
111.6
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
111.4
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
111.0
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
110.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
109.9
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
109.7
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
109.4
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
108.9
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
108.9
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
108.5
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
108.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
107.7
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
107.5
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
107.2
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
106.8
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
106.3
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
106.0
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
105.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
105.5
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
105.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
105.2
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
105.1
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
105.0
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
104.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
103.6
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
102.8
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
102.8
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
102.6
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
102.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
102.5
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
101.7
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
101.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
101.5
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
100.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
100.5
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
100.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
99.2
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
99.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
98.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
97.6
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
97.1
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
96.9
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
96.6
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
95.7
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
95.5
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
95.1
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
95.0
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
94.0
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
93.5
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
93.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
93.1
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
92.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
92.3
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
92.0
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
91.5
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
91.4
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
91.2
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
91.1
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
90.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
89.7
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
89.0
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
88.7
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
88.7
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
88.6
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
88.5
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
88.0
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
86.5
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
86.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
85.9
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
85.4
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
85.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
85.2
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
84.0
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
83.9
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
83.5
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
83.4
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
83.1
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
83.0
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
82.6
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
81.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
81.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
81.0
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
80.9
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
80.7
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
79.5
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
79.3
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
79.3
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
78.7
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
78.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
77.6
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
77.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
77.1
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
77.0
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
75.6
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
75.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
74.7
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
74.2
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
73.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
71.6
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
71.4
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
70.8
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
70.6
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
70.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
70.2
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
70.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
69.8
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
69.4
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
69.3
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
69.0
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
68.1
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
67.9
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
67.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
67.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
66.9
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
66.6
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
65.8
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
65.6
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
65.4
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
65.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
64.5
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
64.4
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
63.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
63.4
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
63.3
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
62.4
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
62.1
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
60.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
60.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
59.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
58.7
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
57.9
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
57.6
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
56.9
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
56.1
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
55.7
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
55.7
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
55.4
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
54.7
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
54.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
53.6
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
51.7
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
51.5
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
51.4
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
47.7
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
46.1
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
39.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
39.7
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
33.7
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.2
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 5.4
Samples: 2
Max nTPM: 5.8
Min nTPM: 5.1
Sample A
5.1
Sample B
5.8
Ventral spinal cord nTPM: 10.2
Samples: 1
Max nTPM: 10.2
Min nTPM: 10.2
Sample A
10.2
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.2
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 42.2
Samples: 4
Max nTPM: 106.0
Min nTPM: 12.6
Sample A
Female
12.6
Sample B
Female
29.7
Sample C
Male
106.0
Sample D
Male
20.5
Ventral spinal cord nTPM: 21.3
Samples: 4
Max nTPM: 43.4
Min nTPM: 6.8
Sample A
Female
6.8
Sample B
Female
14.9
Sample C
Male
43.4
Sample D
Male
19.9
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.5
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 4.5
Samples: 4
Max nTPM: 5.9
Min nTPM: 2.6
Sample A
4.5
Sample B
5.9
Sample C
5.1
Sample D
2.6
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.2
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 21.2
Samples: 4
Max nTPM: 30.2
Min nTPM: 15.0
Sample A
16.3
Sample A
23.3
Sample A
15.0
Sample A
30.2
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The Human Protein Atlas project is funded
