MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA Brain:69.8 nTPM
GTEx:40.2 nTPM
FANTOM5:83.2 Scaled Tags Per Million
Pig:61.1 nTPM
Mouse:18.2 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 69.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.8
2586 Male, age 75, left hemisphere 73.8
1833 Male, age 53, unknown 63.7
1870 Female, age 42, unknown 63.1
1830 Male, age 51, unknown 60.6
2828 Female, age 72, unknown 60.5
2019 Male, age 18, unknown 54.2
2411 Female, age 72, unknown 53.7
2219 Male, age 76, both hemispheres 52.6
1827 Male, age 72, unknown 49.4
2666 Male, age 74, left hemisphere 46.6
Dorsal raphe nucleus
nTPM: 61.8
2016 Female, age 72, unknown 75.6
1828 Male, age 53, unknown 65.6
2750 Male, age 76, both hemispheres 59.8
2047 Male, age 72, unknown 59.2
2298 Female, age 72, unknown 48.6
Inferior colliculus
nTPM: 65.6
1890 Male, age 53, unknown 72.0
2097 Female, age 72, unknown 69.3
1848 Female, age 42, unknown 64.8
2849 Male, age 72, unknown 56.1
Median raphe nucleus
nTPM: 56.2
2220 Male, age 76, midline 56.2
Periaquaductal grey, anterior
nTPM: 50.3
2502 Female, age 75, unknown 56.9
1947 Male, age 18, unknown 50.2
1795 Male, age 51, unknown 43.8
Periaquaductal grey, dorsal
nTPM: 57.2
2850 Male, age 76, both hemispheres 62.0
2464 Female, age 72, unknown 59.6
1840 Male, age 53, unknown 56.4
1831 Male, age 72, unknown 50.9
Periaquaductal grey, lateral
nTPM: 51.3
2053 Male, age 18, unknown 56.8
2140 Male, age 76, both hemispheres 56.7
2272 Male, age 74, both hemispheres 40.3
Pretectal area
nTPM: 52.1
2316 Male, age 76, right hemisphere 60.3
1815 Male, age 53, unknown 57.8
1817 Female, age 42, unknown 56.4
2224 Female, age 72, unknown 54.7
2407 Male, age 75, both hemispheres 51.5
2825 Male, age 18, unknown 51.2
2273 Male, age 74, both hemispheres 50.9
1944 Female, age 72, unknown 50.8
2667 Female, age 75, unknown 48.9
1816 Male, age 51, unknown 45.6
2007 Male, age 72, unknown 44.8
Red nucleus
nTPM: 69.8
1954 Female, age 42, unknown 83.4
1904 Male, age 53, unknown 80.2
1821 Female, age 72, unknown 79.3
1865 Male, age 51, unknown 77.6
2769 Male, age 72, unknown 75.2
2503 Female, age 72, unknown 74.1
2227 Male, age 72, unknown 74.0
2823 Male, age 76, right hemisphere 69.9
2588 Male, age 74, left hemisphere 61.4
2785 Male, age 18, unknown 58.8
2725 Female, age 75, unknown 53.4
2584 Male, age 75, left hemisphere 50.0
Substantia nigra
nTPM: 61.7
2699 Male, age 18, unknown 82.6
2241 Male, age 72, unknown 71.1
2409 Female, age 72, unknown 64.8
1851 Male, age 51, unknown 64.1
2590 Female, age 75, unknown 60.6
1889 Female, age 72, unknown 59.5
1916 Female, age 42, unknown 58.4
2583 Male, age 75, right hemisphere 57.5
2665 Male, age 74, both hemispheres 51.6
1941 Male, age 53, unknown 47.2
Superior colliculus
nTPM: 58.1
1995 Male, age 72, unknown 75.9
1913 Female, age 42, unknown 69.9
2668 Female, age 75, unknown 69.5
1895 Male, age 76, right hemisphere 56.2
1839 Male, age 51, unknown 55.3
2664 Male, age 75, both hemispheres 54.8
2587 Male, age 74, left hemisphere 53.8
2087 Female, age 72, unknown 50.9
2261 Male, age 18, unknown 47.3
1796 Male, age 53, unknown 47.2
Ventral tegmental area
nTPM: 57.2
1942 Male, age 51, unknown 61.5
2410 Female, age 72, unknown 58.7
1915 Female, age 42, unknown 57.6
2223 Female, age 72, unknown 56.7
2218 Male, age 76, both hemispheres 55.4
2021 Male, age 53, unknown 53.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.2
Samples: 183

Max nTPM: 84.2
Min nTPM: 9.6
Std nTPM: 14.3
Median nTPM: 40.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 84.2
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 82.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 77.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 76.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 76.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 73.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 68.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 67.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 67.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 66.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 64.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.2
FF:10158-103A5 76 years, female 83.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.6
Samples: 4

Max nTPM: 80.0
Min nTPM: 49.0
Sample A Female 54.7
Sample B Female 50.5
Sample C Male 49.0
Sample D Male 80.0
Midbrain
nTPM: 61.1
Samples: 4

Max nTPM: 84.8
Min nTPM: 46.3
Sample A Female 84.8
Sample B Female 64.2
Sample C Male 49.0
Sample D Male 46.3
Periaqueductal gray
nTPM: 47.8
Samples: 3

Max nTPM: 56.4
Min nTPM: 39.0
Sample B Female 56.4
Sample C Male 39.0
Sample D Male 47.9
Superior colliculi
nTPM: 54.7
Samples: 4

Max nTPM: 59.5
Min nTPM: 47.9
Sample A Female 59.5
Sample B Female 47.9
Sample C Male 54.5
Sample D Male 56.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.9
Sample A Male 16.9
Sample B Male 17.2
Sample C Female 20.0
Sample D Female 18.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
76003323 Antisense, RP_060608_02_B02, Mouse strain C57BL/6J (56 days, male) 0.5

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