MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.5 nTPM
HPA Brain:71.7 nTPM
GTEx:2.5 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:24.2 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.6
2219 Male, age 76, both hemispheres 80.0
2586 Male, age 75, left hemisphere 74.1
2666 Male, age 74, left hemisphere 71.4
1827 Male, age 72, unknown 69.5
2828 Female, age 72, unknown 68.2
1833 Male, age 53, unknown 68.0
2019 Male, age 18, unknown 65.8
1830 Male, age 51, unknown 65.1
2411 Female, age 72, unknown 62.2
1870 Female, age 42, unknown 62.1
Dorsal raphe nucleus
nTPM: 60.8
1828 Male, age 53, unknown 67.7
2750 Male, age 76, both hemispheres 66.3
2047 Male, age 72, unknown 61.2
2016 Female, age 72, unknown 56.7
2298 Female, age 72, unknown 51.8
Inferior colliculus
nTPM: 63.5
2849 Male, age 72, unknown 77.6
1848 Female, age 42, unknown 61.5
1890 Male, age 53, unknown 60.9
2097 Female, age 72, unknown 54.1
Median raphe nucleus
nTPM: 71.7
2220 Male, age 76, midline 71.7
Periaquaductal grey, anterior
nTPM: 66.0
1947 Male, age 18, unknown 69.9
1795 Male, age 51, unknown 65.0
2502 Female, age 75, unknown 63.0
Periaquaductal grey, dorsal
nTPM: 67.1
2850 Male, age 76, both hemispheres 78.1
2464 Female, age 72, unknown 68.5
1831 Male, age 72, unknown 66.6
1840 Male, age 53, unknown 55.1
Periaquaductal grey, lateral
nTPM: 64.1
2140 Male, age 76, both hemispheres 68.8
2272 Male, age 74, both hemispheres 61.8
2053 Male, age 18, unknown 61.7
Pretectal area
nTPM: 69.7
2667 Female, age 75, unknown 81.2
1816 Male, age 51, unknown 78.2
1817 Female, age 42, unknown 70.6
2007 Male, age 72, unknown 70.4
1815 Male, age 53, unknown 69.5
2825 Male, age 18, unknown 68.7
2407 Male, age 75, both hemispheres 68.6
2316 Male, age 76, right hemisphere 68.4
1944 Female, age 72, unknown 67.3
2224 Female, age 72, unknown 64.6
2273 Male, age 74, both hemispheres 59.8
Red nucleus
nTPM: 66.7
2823 Male, age 76, right hemisphere 80.1
2584 Male, age 75, left hemisphere 75.5
1954 Female, age 42, unknown 65.8
2725 Female, age 75, unknown 65.7
1904 Male, age 53, unknown 65.6
1821 Female, age 72, unknown 65.5
1865 Male, age 51, unknown 65.4
2227 Male, age 72, unknown 64.8
2769 Male, age 72, unknown 64.8
2503 Female, age 72, unknown 63.5
2588 Male, age 74, left hemisphere 62.8
2785 Male, age 18, unknown 60.4
Substantia nigra
nTPM: 57.7
2665 Male, age 74, both hemispheres 75.7
1941 Male, age 53, unknown 66.2
2583 Male, age 75, right hemisphere 64.6
2590 Female, age 75, unknown 60.6
2699 Male, age 18, unknown 59.7
1889 Female, age 72, unknown 55.4
1851 Male, age 51, unknown 54.7
1916 Female, age 42, unknown 50.7
2241 Male, age 72, unknown 47.1
2409 Female, age 72, unknown 41.8
Superior colliculus
nTPM: 64.1
2664 Male, age 75, both hemispheres 79.7
2261 Male, age 18, unknown 68.9
1839 Male, age 51, unknown 66.6
1913 Female, age 42, unknown 64.3
1796 Male, age 53, unknown 63.5
2087 Female, age 72, unknown 63.4
1995 Male, age 72, unknown 63.1
1895 Male, age 76, right hemisphere 59.7
2587 Male, age 74, left hemisphere 57.8
2668 Female, age 75, unknown 54.3
Ventral tegmental area
nTPM: 60.2
2218 Male, age 76, both hemispheres 69.6
2223 Female, age 72, unknown 63.0
2410 Female, age 72, unknown 59.0
2021 Male, age 53, unknown 58.9
1942 Male, age 51, unknown 57.7
1915 Female, age 42, unknown 53.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.5
Samples: 139

Max nTPM: 12.8
Min nTPM: 0.0
Std nTPM: 2.8
Median nTPM: 1.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 12.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 11.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 11.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 10.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 9.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 9.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 8.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 8.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 7.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 6.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 6.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.4
FF:10158-103A5 76 years, female 33.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 28.2
Min nTPM: 22.6
Sample A Female 28.2
Sample B Female 25.9
Sample C Male 28.0
Sample D Male 22.6
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 32.7
Min nTPM: 21.4
Sample A Female 30.6
Sample B Female 21.4
Sample C Male 32.7
Sample D Male 23.1
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 22.6
Min nTPM: 19.5
Sample B Female 20.9
Sample C Male 22.6
Sample D Male 19.5
Superior colliculi
nTPM: 27.1
Samples: 4

Max nTPM: 29.2
Min nTPM: 23.8
Sample A Female 28.3
Sample B Female 29.2
Sample C Male 26.9
Sample D Male 23.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 26.5
Min nTPM: 23.2
Sample A Male 23.8
Sample B Male 23.2
Sample C Female 23.3
Sample D Female 26.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
71381109 Antisense, RP_050510_02_A02, Mouse strain C57BL/6J (56 days, male) 1.4

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