A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.9
nTPM
Monaco:
31.4
nTPM
Schmiedel:
31.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.9
HPA sample
nTPM
NK-cell nTPM: 18.9
Samples: 6
Max nTPM: 26.7
Min nTPM: 9.3
P10809_1013
11.3
P10809_1033
26.7
P10809_1052
16.9
P10809_1071
25.6
P10809_1093
23.5
P10809_1103
9.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.4
Monaco sample
nTPM
NK-cell nTPM: 31.5
Samples: 4
Max nTPM: 38.6
Min nTPM: 26.6
RHH5316_R3683
38.6
RHH5224_R3596
26.6
RHH5253_R3625
30.4
RHH5282_R3654
30.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.0
Schmiedel sample id
TPM
NK-cell TPM: 31.0
Samples: 90
Max TPM: 57.6
Min TPM: 9.6
NK_1
57.6
NK_2
54.8
NK_3
52.4
NK_4
50.7
NK_5
47.8
NK_6
47.4
NK_7
46.9
NK_8
45.2
NK_9
44.7
NK_10
44.5
NK_11
44.2
NK_12
43.7
NK_13
43.3
NK_14
43.3
NK_15
42.3
NK_16
42.1
NK_17
41.6
NK_18
40.8
NK_19
40.2
NK_20
40.2
NK_21
40.1
NK_22
39.8
NK_23
39.6
NK_24
39.3
NK_25
39.2
NK_26
38.9
NK_27
38.8
NK_28
38.8
NK_29
36.9
NK_30
36.6
NK_31
36.1
NK_32
35.9
NK_33
35.7
NK_34
35.5
NK_35
35.3
NK_36
34.6
NK_37
34.3
NK_38
34.0
NK_39
33.5
NK_40
33.5
NK_41
33.5
NK_42
32.6
NK_43
31.8
NK_44
30.9
NK_45
30.8
NK_46
30.0
NK_47
29.9
NK_48
29.8
NK_49
29.4
NK_50
29.4
NK_51
28.8
NK_52
28.2
NK_53
28.0
NK_54
27.5
NK_55
27.4
NK_56
27.2
NK_57
27.2
NK_58
26.7
NK_59
25.8
NK_60
25.8
NK_61
25.6
NK_62
24.6
NK_63
24.6
NK_64
24.3
NK_65
24.1
NK_66
23.9
NK_67
23.8
NK_68
23.6
NK_69
22.5
NK_70
21.6
NK_71
21.6
NK_72
21.6
NK_73
20.6
NK_74
20.4
NK_75
20.4
NK_76
20.4
NK_77
20.4
NK_78
19.7
NK_79
17.9
NK_80
17.8
NK_81
16.6
NK_82
14.7
NK_83
14.5
NK_84
12.7
NK_85
12.7
NK_86
11.9
NK_87
10.7
NK_88
10.5
NK_89
10.1
NK_90
9.6
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