A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.2
nTPM
Monaco:
24.2
nTPM
Schmiedel:
13.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.2
HPA sample
nTPM
Classical monocyte nTPM: 9.1
Samples: 6
Max nTPM: 10.9
Min nTPM: 6.8
P10809_1003
10.0
P10809_1020
10.9
P10809_1039
10.0
P10809_1058
6.8
P10809_1080
7.8
P10809_1107
9.0
Intermediate monocyte nTPM: 13.2
Samples: 6
Max nTPM: 19.2
Min nTPM: 8.4
P10809_1004
11.9
P10809_1023
11.1
P10809_1042
19.2
P10809_1061
11.3
P10809_1081
8.4
P10809_1108
17.4
Non-classical monocyte nTPM: 6.5
Samples: 5
Max nTPM: 11.0
Min nTPM: 0.1
P10809_1005
9.7
P10809_1053
11.0
P10809_1072
0.1
P10809_1082
3.6
P10809_1109
8.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.2
Monaco sample
nTPM
Classical monocyte nTPM: 21.0
Samples: 4
Max nTPM: 27.0
Min nTPM: 13.8
RHH5313_R3680
24.1
RHH5221_R3593
13.8
RHH5250_R3622
27.0
RHH5279_R3651
18.9
Intermediate monocyte nTPM: 24.2
Samples: 4
Max nTPM: 29.8
Min nTPM: 21.4
RHH5314_R3681
29.8
RHH5222_R3594
21.4
RHH5251_R3623
21.4
RHH5280_R3652
24.3
Non-classical monocyte nTPM: 20.7
Samples: 4
Max nTPM: 23.3
Min nTPM: 18.1
RHH5315_R3682
23.3
RHH5223_R3595
18.1
RHH5252_R3624
21.9
RHH5281_R3653
19.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.2
Schmiedel sample id
TPM
Classical monocyte TPM: 10.7
Samples: 91
Max TPM: 18.8
Min TPM: 5.1
MONOCYTES_1
18.8
MONOCYTES_2
17.2
MONOCYTES_3
17.1
MONOCYTES_4
17.0
MONOCYTES_5
16.7
MONOCYTES_6
16.2
MONOCYTES_7
15.3
MONOCYTES_8
15.2
MONOCYTES_9
15.1
MONOCYTES_10
15.0
MONOCYTES_11
14.9
MONOCYTES_12
14.9
MONOCYTES_13
14.8
MONOCYTES_14
14.7
MONOCYTES_15
14.5
MONOCYTES_16
14.0
MONOCYTES_17
13.5
MONOCYTES_18
13.5
MONOCYTES_19
13.3
MONOCYTES_20
12.9
MONOCYTES_21
12.9
MONOCYTES_22
12.9
MONOCYTES_23
12.9
MONOCYTES_24
12.7
MONOCYTES_25
12.7
MONOCYTES_26
12.5
MONOCYTES_27
12.4
MONOCYTES_28
12.4
MONOCYTES_29
12.3
MONOCYTES_30
12.1
MONOCYTES_31
12.1
MONOCYTES_32
12.0
MONOCYTES_33
11.9
MONOCYTES_34
11.9
MONOCYTES_35
11.8
MONOCYTES_36
11.7
MONOCYTES_37
11.7
MONOCYTES_38
11.5
MONOCYTES_39
11.4
MONOCYTES_40
11.4
MONOCYTES_41
11.3
MONOCYTES_42
11.2
MONOCYTES_43
10.8
MONOCYTES_44
10.8
MONOCYTES_45
10.6
MONOCYTES_46
10.6
MONOCYTES_47
10.4
MONOCYTES_48
10.4
MONOCYTES_49
10.3
MONOCYTES_50
10.3
MONOCYTES_51
10.2
MONOCYTES_52
10.1
MONOCYTES_53
10.0
MONOCYTES_54
9.9
MONOCYTES_55
9.8
MONOCYTES_56
9.5
MONOCYTES_57
9.1
MONOCYTES_58
8.9
MONOCYTES_59
8.9
MONOCYTES_60
8.9
MONOCYTES_61
8.8
MONOCYTES_62
8.8
MONOCYTES_63
8.6
MONOCYTES_64
8.5
MONOCYTES_65
8.5
MONOCYTES_66
8.4
MONOCYTES_67
8.4
MONOCYTES_68
8.4
MONOCYTES_69
8.1
MONOCYTES_70
8.1
MONOCYTES_71
8.0
MONOCYTES_72
8.0
MONOCYTES_73
7.6
MONOCYTES_74
7.5
MONOCYTES_75
7.3
MONOCYTES_76
7.3
MONOCYTES_77
7.2
MONOCYTES_78
7.0
MONOCYTES_79
6.5
MONOCYTES_80
6.4
MONOCYTES_81
6.3
MONOCYTES_82
6.2
MONOCYTES_83
6.1
MONOCYTES_84
6.0
MONOCYTES_85
5.8
MONOCYTES_86
5.7
MONOCYTES_87
5.7
MONOCYTES_88
5.5
MONOCYTES_89
5.2
MONOCYTES_90
5.1
MONOCYTES_91
5.1
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Non-classical monocyte TPM: 13.2
Samples: 90
Max TPM: 25.5
Min TPM: 3.2
M2_1
25.5
M2_2
22.9
M2_3
21.5
M2_4
21.1
M2_5
20.5
M2_6
20.5
M2_7
20.2
M2_8
20.1
M2_9
20.0
M2_10
20.0
M2_11
19.5
M2_12
18.6
M2_13
18.6
M2_14
18.5
M2_15
18.3
M2_16
18.0
M2_17
17.9
M2_18
17.9
M2_19
17.8
M2_20
17.6
M2_21
17.5
M2_22
17.5
M2_23
17.3
M2_24
16.7
M2_25
16.7
M2_26
16.4
M2_27
16.2
M2_28
15.9
M2_29
15.9
M2_30
15.6
M2_31
15.6
M2_32
15.2
M2_33
15.2
M2_34
15.1
M2_35
15.1
M2_36
15.1
M2_37
15.0
M2_38
14.9
M2_39
14.6
M2_40
14.6
M2_41
14.5
M2_42
14.5
M2_43
14.2
M2_44
14.0
M2_45
13.6
M2_46
13.6
M2_47
13.1
M2_48
13.0
M2_49
13.0
M2_50
12.5
M2_51
12.2
M2_52
12.1
M2_53
12.0
M2_54
12.0
M2_55
11.9
M2_56
11.6
M2_57
11.6
M2_58
11.0
M2_59
10.9
M2_60
10.7
M2_61
10.2
M2_62
10.1
M2_63
10.0
M2_64
9.6
M2_65
9.5
M2_66
9.3
M2_67
9.1
M2_68
9.0
M2_69
8.7
M2_70
8.7
M2_71
8.4
M2_72
8.4
M2_73
8.2
M2_74
8.0
M2_75
7.9
M2_76
7.7
M2_77
7.7
M2_78
7.7
M2_79
7.6
M2_80
7.3
M2_81
7.2
M2_82
7.2
M2_83
6.8
M2_84
6.4
M2_85
6.3
M2_86
6.1
M2_87
4.1
M2_88
4.0
M2_89
3.4
M2_90
3.2
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