MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.1 nTPM
HPA Brain:109.6 nTPM
GTEx:99.1 nTPM
FANTOM5:319.2 Scaled Tags Per Million
Pig:175.3 nTPM
Mouse:170.9 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.1
2411 Female, age 72, unknown 96.2
1870 Female, age 42, unknown 87.2
1833 Male, age 53, unknown 82.7
2219 Male, age 76, both hemispheres 81.1
2666 Male, age 74, left hemisphere 77.4
2019 Male, age 18, unknown 75.1
1827 Male, age 72, unknown 74.7
1830 Male, age 51, unknown 73.9
2586 Male, age 75, left hemisphere 62.3
2828 Female, age 72, unknown 60.0
Dorsal raphe nucleus
nTPM: 88.3
2750 Male, age 76, both hemispheres 100.1
2298 Female, age 72, unknown 93.3
1828 Male, age 53, unknown 93.0
2047 Male, age 72, unknown 90.0
2016 Female, age 72, unknown 65.3
Inferior colliculus
nTPM: 79.4
2097 Female, age 72, unknown 83.7
2849 Male, age 72, unknown 81.8
1848 Female, age 42, unknown 79.0
1890 Male, age 53, unknown 72.9
Median raphe nucleus
nTPM: 109.6
2220 Male, age 76, midline 109.6
Periaquaductal grey, anterior
nTPM: 79.5
1947 Male, age 18, unknown 85.2
2502 Female, age 75, unknown 79.0
1795 Male, age 51, unknown 74.4
Periaquaductal grey, dorsal
nTPM: 78.2
2850 Male, age 76, both hemispheres 89.4
1840 Male, age 53, unknown 77.3
2464 Female, age 72, unknown 76.1
1831 Male, age 72, unknown 69.8
Periaquaductal grey, lateral
nTPM: 73.0
2053 Male, age 18, unknown 77.1
2272 Male, age 74, both hemispheres 72.1
2140 Male, age 76, both hemispheres 69.7
Pretectal area
nTPM: 85.1
1817 Female, age 42, unknown 98.2
1816 Male, age 51, unknown 97.3
2224 Female, age 72, unknown 96.1
2007 Male, age 72, unknown 95.4
1944 Female, age 72, unknown 93.6
2825 Male, age 18, unknown 87.5
1815 Male, age 53, unknown 86.7
2667 Female, age 75, unknown 78.0
2273 Male, age 74, both hemispheres 70.6
2316 Male, age 76, right hemisphere 67.2
2407 Male, age 75, both hemispheres 65.2
Red nucleus
nTPM: 76.1
1821 Female, age 72, unknown 99.9
2725 Female, age 75, unknown 90.0
2584 Male, age 75, left hemisphere 79.4
2823 Male, age 76, right hemisphere 75.3
1954 Female, age 42, unknown 75.1
1865 Male, age 51, unknown 73.7
2503 Female, age 72, unknown 72.9
2769 Male, age 72, unknown 71.2
2227 Male, age 72, unknown 70.8
2785 Male, age 18, unknown 70.8
2588 Male, age 74, left hemisphere 68.6
1904 Male, age 53, unknown 65.9
Substantia nigra
nTPM: 97.2
2241 Male, age 72, unknown 131.6
1941 Male, age 53, unknown 127.3
1916 Female, age 42, unknown 117.0
1851 Male, age 51, unknown 101.2
1889 Female, age 72, unknown 98.4
2409 Female, age 72, unknown 86.9
2665 Male, age 74, both hemispheres 82.9
2699 Male, age 18, unknown 79.5
2590 Female, age 75, unknown 77.0
2583 Male, age 75, right hemisphere 69.9
Superior colliculus
nTPM: 76.3
1895 Male, age 76, right hemisphere 90.5
2668 Female, age 75, unknown 84.9
2587 Male, age 74, left hemisphere 84.0
2261 Male, age 18, unknown 83.1
1839 Male, age 51, unknown 82.0
2087 Female, age 72, unknown 76.2
1796 Male, age 53, unknown 75.5
1913 Female, age 42, unknown 71.0
1995 Male, age 72, unknown 58.4
2664 Male, age 75, both hemispheres 57.0
Ventral tegmental area
nTPM: 88.3
2218 Male, age 76, both hemispheres 102.5
2410 Female, age 72, unknown 98.6
1915 Female, age 42, unknown 93.5
2223 Female, age 72, unknown 92.2
1942 Male, age 51, unknown 74.0
2021 Male, age 53, unknown 69.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 99.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.1
Samples: 183

Max nTPM: 270.4
Min nTPM: 53.4
Std nTPM: 29.7
Median nTPM: 94.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 270.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 189.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 182.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 181.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 173.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 170.2
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 169.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 165.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 157.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 155.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 154.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 319.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 319.2
FF:10158-103A5 76 years, female 319.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 175.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 137.3
Samples: 4

Max nTPM: 198.8
Min nTPM: 88.7
Sample A Female 198.8
Sample B Female 99.0
Sample C Male 162.5
Sample D Male 88.7
Midbrain
nTPM: 175.3
Samples: 4

Max nTPM: 211.2
Min nTPM: 144.7
Sample A Female 211.2
Sample B Female 144.7
Sample C Male 193.9
Sample D Male 151.4
Periaqueductal gray
nTPM: 135.0
Samples: 3

Max nTPM: 151.7
Min nTPM: 123.8
Sample B Female 123.8
Sample C Male 151.7
Sample D Male 129.4
Superior colliculi
nTPM: 165.8
Samples: 4

Max nTPM: 212.2
Min nTPM: 104.7
Sample A Female 200.5
Sample B Female 104.7
Sample C Male 212.2
Sample D Male 145.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 170.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 170.9
Samples: 4

Max nTPM: 176.3
Min nTPM: 165.7
Sample A Male 172.6
Sample B Male 169.0
Sample C Female 165.7
Sample D Female 176.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
75651231 Antisense, RP_060518_01_D09, Mouse strain C57BL/6J (56 days, male) 0.9
74357596 Antisense, RP_060117_01_A11, Mouse strain C57BL/6J (56 days, male) 0.5

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