MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.8 nTPM
HPA Brain:22.5 nTPM
GTEx:11.8 nTPM
FANTOM5:70.4 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:17.4 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.6
2019 Male, age 18, unknown 20.5
1870 Female, age 42, unknown 19.7
1830 Male, age 51, unknown 18.9
2828 Female, age 72, unknown 18.0
1833 Male, age 53, unknown 17.9
2586 Male, age 75, left hemisphere 17.5
1827 Male, age 72, unknown 16.1
2411 Female, age 72, unknown 16.1
2666 Male, age 74, left hemisphere 15.8
2219 Male, age 76, both hemispheres 15.3
Dorsal raphe nucleus
nTPM: 22.3
2298 Female, age 72, unknown 26.9
2016 Female, age 72, unknown 25.5
1828 Male, age 53, unknown 21.9
2750 Male, age 76, both hemispheres 19.3
2047 Male, age 72, unknown 18.2
Inferior colliculus
nTPM: 19.6
2097 Female, age 72, unknown 22.3
1890 Male, age 53, unknown 20.2
1848 Female, age 42, unknown 18.8
2849 Male, age 72, unknown 17.2
Median raphe nucleus
nTPM: 18.9
2220 Male, age 76, midline 18.9
Periaquaductal grey, anterior
nTPM: 19.5
2502 Female, age 75, unknown 20.8
1795 Male, age 51, unknown 19.1
1947 Male, age 18, unknown 18.5
Periaquaductal grey, dorsal
nTPM: 22.4
2850 Male, age 76, both hemispheres 27.7
1831 Male, age 72, unknown 22.0
1840 Male, age 53, unknown 21.0
2464 Female, age 72, unknown 18.9
Periaquaductal grey, lateral
nTPM: 22.5
2272 Male, age 74, both hemispheres 25.3
2140 Male, age 76, both hemispheres 23.7
2053 Male, age 18, unknown 18.5
Pretectal area
nTPM: 19.6
2273 Male, age 74, both hemispheres 27.0
2224 Female, age 72, unknown 22.3
2316 Male, age 76, right hemisphere 22.1
2667 Female, age 75, unknown 19.2
1817 Female, age 42, unknown 18.5
2407 Male, age 75, both hemispheres 18.5
1815 Male, age 53, unknown 18.3
1944 Female, age 72, unknown 18.2
1816 Male, age 51, unknown 17.4
2825 Male, age 18, unknown 17.1
2007 Male, age 72, unknown 17.0
Red nucleus
nTPM: 18.4
1954 Female, age 42, unknown 21.2
1821 Female, age 72, unknown 20.6
2725 Female, age 75, unknown 19.7
1904 Male, age 53, unknown 19.6
2227 Male, age 72, unknown 19.5
1865 Male, age 51, unknown 18.9
2785 Male, age 18, unknown 18.8
2769 Male, age 72, unknown 18.5
2503 Female, age 72, unknown 18.4
2823 Male, age 76, right hemisphere 18.4
2584 Male, age 75, left hemisphere 14.6
2588 Male, age 74, left hemisphere 12.2
Substantia nigra
nTPM: 20.9
2241 Male, age 72, unknown 26.2
2699 Male, age 18, unknown 25.3
1916 Female, age 42, unknown 21.4
2665 Male, age 74, both hemispheres 20.6
1851 Male, age 51, unknown 20.3
1941 Male, age 53, unknown 20.0
2409 Female, age 72, unknown 19.9
2590 Female, age 75, unknown 19.2
2583 Male, age 75, right hemisphere 18.6
1889 Female, age 72, unknown 17.6
Superior colliculus
nTPM: 18.8
1995 Male, age 72, unknown 23.2
1913 Female, age 42, unknown 20.7
2587 Male, age 74, left hemisphere 20.0
1839 Male, age 51, unknown 19.6
2087 Female, age 72, unknown 18.8
2261 Male, age 18, unknown 18.1
2668 Female, age 75, unknown 17.6
2664 Male, age 75, both hemispheres 17.3
1796 Male, age 53, unknown 16.8
1895 Male, age 76, right hemisphere 15.3
Ventral tegmental area
nTPM: 20.4
2021 Male, age 53, unknown 23.2
2218 Male, age 76, both hemispheres 21.8
1942 Male, age 51, unknown 20.1
1915 Female, age 42, unknown 19.6
2223 Female, age 72, unknown 19.0
2410 Female, age 72, unknown 18.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.8
Samples: 183

Max nTPM: 24.4
Min nTPM: 6.9
Std nTPM: 3.1
Median nTPM: 11.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 24.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 24.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 21.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 20.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 19.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 18.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 18.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 17.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 17.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 17.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 70.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.4
FF:10158-103A5 76 years, female 70.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.7
Samples: 4

Max nTPM: 31.7
Min nTPM: 21.3
Sample A Female 27.7
Sample B Female 31.7
Sample C Male 22.0
Sample D Male 21.3
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 29.8
Min nTPM: 13.6
Sample A Female 29.8
Sample B Female 26.9
Sample C Male 13.6
Sample D Male 13.6
Periaqueductal gray
nTPM: 24.6
Samples: 3

Max nTPM: 27.0
Min nTPM: 23.0
Sample B Female 23.8
Sample C Male 27.0
Sample D Male 23.0
Superior colliculi
nTPM: 20.5
Samples: 4

Max nTPM: 28.5
Min nTPM: 15.2
Sample A Female 21.6
Sample B Female 28.5
Sample C Male 15.2
Sample D Male 16.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 18.3
Min nTPM: 16.4
Sample A Male 16.8
Sample B Male 18.0
Sample C Female 16.4
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75991092 Antisense, RP_060608_01_H07, Mouse strain C57BL/6J (56 days, male) 0.3

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