MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.7 nTPM
HPA Brain:92.2 nTPM
GTEx:74.7 nTPM
FANTOM5:80.9 Scaled Tags Per Million
Pig:82.4 nTPM
Mouse:45.6 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 92.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.3
1830 Male, age 51, unknown 86.3
2411 Female, age 72, unknown 81.9
1870 Female, age 42, unknown 80.6
1833 Male, age 53, unknown 80.3
2019 Male, age 18, unknown 77.1
2828 Female, age 72, unknown 67.8
2586 Male, age 75, left hemisphere 54.3
2666 Male, age 74, left hemisphere 53.6
2219 Male, age 76, both hemispheres 51.5
1827 Male, age 72, unknown 49.3
Dorsal raphe nucleus
nTPM: 54.6
2750 Male, age 76, both hemispheres 91.9
1828 Male, age 53, unknown 54.5
2016 Female, age 72, unknown 52.5
2047 Male, age 72, unknown 40.9
2298 Female, age 72, unknown 33.4
Inferior colliculus
nTPM: 44.5
2849 Male, age 72, unknown 48.8
1848 Female, age 42, unknown 47.4
1890 Male, age 53, unknown 45.3
2097 Female, age 72, unknown 36.7
Median raphe nucleus
nTPM: 44.1
2220 Male, age 76, midline 44.1
Periaquaductal grey, anterior
nTPM: 42.3
2502 Female, age 75, unknown 45.0
1947 Male, age 18, unknown 43.7
1795 Male, age 51, unknown 38.2
Periaquaductal grey, dorsal
nTPM: 33.7
2464 Female, age 72, unknown 48.7
1831 Male, age 72, unknown 36.7
2850 Male, age 76, both hemispheres 26.6
1840 Male, age 53, unknown 23.0
Periaquaductal grey, lateral
nTPM: 38.6
2272 Male, age 74, both hemispheres 45.3
2053 Male, age 18, unknown 42.1
2140 Male, age 76, both hemispheres 28.3
Pretectal area
nTPM: 48.2
2316 Male, age 76, right hemisphere 69.6
1815 Male, age 53, unknown 60.9
2407 Male, age 75, both hemispheres 58.6
2667 Female, age 75, unknown 52.8
1817 Female, age 42, unknown 51.4
2825 Male, age 18, unknown 49.6
2007 Male, age 72, unknown 48.9
2273 Male, age 74, both hemispheres 41.3
2224 Female, age 72, unknown 39.3
1944 Female, age 72, unknown 30.3
1816 Male, age 51, unknown 27.7
Red nucleus
nTPM: 92.2
2823 Male, age 76, right hemisphere 122.5
1865 Male, age 51, unknown 112.0
1904 Male, age 53, unknown 108.8
1821 Female, age 72, unknown 105.3
2769 Male, age 72, unknown 98.1
2227 Male, age 72, unknown 90.3
2785 Male, age 18, unknown 89.4
2503 Female, age 72, unknown 87.7
1954 Female, age 42, unknown 82.4
2588 Male, age 74, left hemisphere 80.4
2725 Female, age 75, unknown 65.1
2584 Male, age 75, left hemisphere 63.9
Substantia nigra
nTPM: 52.9
1851 Male, age 51, unknown 64.9
2409 Female, age 72, unknown 64.6
2699 Male, age 18, unknown 62.9
2583 Male, age 75, right hemisphere 60.5
1889 Female, age 72, unknown 55.5
2590 Female, age 75, unknown 53.9
2241 Male, age 72, unknown 43.8
2665 Male, age 74, both hemispheres 43.1
1916 Female, age 42, unknown 40.3
1941 Male, age 53, unknown 40.0
Superior colliculus
nTPM: 58.9
1913 Female, age 42, unknown 88.7
1995 Male, age 72, unknown 80.0
1895 Male, age 76, right hemisphere 75.6
2587 Male, age 74, left hemisphere 64.1
2668 Female, age 75, unknown 62.4
1839 Male, age 51, unknown 59.9
1796 Male, age 53, unknown 48.4
2664 Male, age 75, both hemispheres 41.6
2087 Female, age 72, unknown 35.6
2261 Male, age 18, unknown 33.1
Ventral tegmental area
nTPM: 57.5
2223 Female, age 72, unknown 73.8
2410 Female, age 72, unknown 65.5
2021 Male, age 53, unknown 58.3
1915 Female, age 42, unknown 50.4
1942 Male, age 51, unknown 49.2
2218 Male, age 76, both hemispheres 47.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 74.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.7
Samples: 183

Max nTPM: 318.1
Min nTPM: 10.0
Std nTPM: 43.7
Median nTPM: 64.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 318.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 273.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 201.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 199.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 199.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 197.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 188.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 166.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 163.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 155.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 150.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 80.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.9
FF:10158-103A5 76 years, female 80.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 82.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 82.4
Samples: 4

Max nTPM: 123.0
Min nTPM: 60.8
Sample A Female 77.7
Sample B Female 60.8
Sample C Male 67.9
Sample D Male 123.0
Midbrain
nTPM: 80.0
Samples: 4

Max nTPM: 138.0
Min nTPM: 45.7
Sample A Female 138.0
Sample B Female 83.2
Sample C Male 45.7
Sample D Male 53.2
Periaqueductal gray
nTPM: 57.8
Samples: 3

Max nTPM: 69.6
Min nTPM: 48.5
Sample B Female 69.6
Sample C Male 48.5
Sample D Male 55.2
Superior colliculi
nTPM: 63.8
Samples: 4

Max nTPM: 78.2
Min nTPM: 39.9
Sample A Female 72.6
Sample B Female 39.9
Sample C Male 64.5
Sample D Male 78.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.7
Samples: 4

Max nTPM: 51.0
Min nTPM: 36.4
Sample A Male 51.0
Sample B Male 36.4
Sample C Female 47.1
Sample D Female 48.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
80471950 Antisense, RP_070208_04_E06, Mouse strain C57BL/6J (56 days, male) 0.7

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