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BETA
  • SUMMARY

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  • RPS15
EVOLUTIONARY RETINA Show tissue menu
BRAIN28 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM10 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE12 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CORPUS CALLOSUM DORSAL ROOT GANGLION ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
MOTOR AND PREFRONTAL CORTEX OCCIPITAL CORTEX OLFACTORY BULB PONS RETROSPLENIAL AND CINGULATE CORTEX SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES PERICARDIUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:218.0 nTPM
GTEx:218.0 nTPM
FANTOM5:102.4 Scaled Tags Per Million
Mouse:1059.4 nTPM
Rat:214.3 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

218.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 218.0
Samples: 105

Max nTPM: 544.0
Min nTPM: 8.5
Std nTPM: 126.2
Median nTPM:
218_1 71 years, female 544.0
163_1 78 years, male 467.1
319_1 81 years, male 463.3
356_1 87 years, female 456.4
354_1 81 years, female 453.3
353_1 82 years, female 446.4
452_1 88 years, female 442.2
352_1 62 years, male 430.5
351_1 91 years, male 422.4
321_1 62 years, female 419.6
377_1 82 years, female 393.9
320_1 89 years, female 386.5
349_1 83 years, male 383.7
355_1 70 years, female 381.9
350_1 84 years, female 381.4
177_1 74 years, male 373.3
506_1 65 years, male 359.7
386_1 76 years, male 350.6
243_1 75 years, male 349.3
376_1 75 years, female 348.1
295_1 61 years, female 335.0
394_1 75 years, female 333.9
172_1 72 years, female 332.6
322_1 76 years, male 321.4
379_1 60 years, male 313.0
293_1 68 years, female 304.0
406_1 79 years, male 294.0
318_1 68 years, male 291.2
292_1 71 years, male 285.0
335_1 73 years, female 283.5
99_1 64 years, male 283.2
447_1 81 years, male 281.7
384_1 83 years, male 280.2
317_1 60 years, male 280.0
503_1 68 years, male 274.4
173_1 67 years, male 269.8
286_1 68 years, female 267.4
6_1 73 years, female 259.0
404_1 82 years, female 254.1
251_1 78 years, male 252.8
237_1 82 years, male 246.7
425_1 59 years, female 246.6
4_1 88 years, female 238.9
189_1 76 years, male 237.7
2_1 77 years, female 236.6
264_1 73 years, female 235.6
389_1 86 years, female 233.1
316_1 62 years, male 221.5
517_1 88 years, male 220.6
291_1 76 years, male 217.2
348_1 84 years, male 216.3
480_1 63 years, male 211.8
405_1 91 years, male 208.3
375_1 74 years, female 206.4
115_1 83 years, male 200.5
347_1 72 years, male 192.0
137_1 83 years, male 187.6
145_1 84 years, male 187.0
396_1 62 years, male 185.1
526_1 61 years, male 179.3
17_1 71 years, male 178.1
246_1 77 years, male 175.9
229_1 69 years, female 175.8
153_1 70 years, female 174.1
35_1 74 years, female 172.8
41_1 94 years, female 169.6
120_1 70 years, female 159.0
265_1 87 years, male 156.1
9_1 66 years, female 155.6
468_1 89 years, male 154.5
254_1 77 years, female 154.0
18_1 88 years, male 152.9
266_1 85 years, male 142.0
311_1 78 years, male 138.7
314_1 67 years, male 137.4
217_1 76 years, male 135.0
126_1 63 years, male 128.8
518_1 75 years, female 126.7
109_1 81 years, female 125.8
42_1 85 years, male 122.0
288_1 66 years, female 119.7
313_1 79 years, female 93.9
307_1 66 years, female 93.2
324_1 76 years, male 92.2
117_1 61 years, male 83.7
139_1 64 years, female 83.4
162_1 79 years, female 79.1
499_1 55 years, female 78.5
315_1 62 years, female 78.3
119_1 70 years, female 78.2
81_1 67 years, male 77.8
142_1 61 years, female 69.9
308_1 70 years, female 68.0
32_1 67 years, male 54.5
43_1 64 years, female 50.3
89_1 63 years, male 47.3
495_1 57 years, female 47.3
415_1 77 years, female 45.5
414_1 84 years, female 35.1
501_1 88 years, male 33.8
466_1 57 years, female 32.9
149_1 88 years, male 19.7
413_1 59 years, female 16.7
490_1 67 years, female 9.0
491_1 89 years, female 8.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 102.4
FF:10030-101E3 24-65 years, mixed 102.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1059.4
Mouse sample Sample description nTPM
Retina
nTPM: 1059.4
Samples: 3

Max nTPM: 1185.4
Min nTPM: 867.4
Sample D 1185.4
Sample B 867.4
Sample C 1125.4

RETINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.3
Rat sample Sample description nTPM
Retina
nTPM: 214.3
Samples: 4

Max nTPM: 228.8
Min nTPM: 205.0
Sample B 205.0
Sample A 210.1
Sample A 228.8
Sample A 213.3

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