A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5360.9
nTPM
Monaco:
671.2
nTPM
Schmiedel:
207.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5360.9
HPA sample
nTPM
Memory B-cell nTPM: 5360.9
Samples: 6
Max nTPM: 10832.6
Min nTPM: 3322.8
P10809_1017
3322.8
P10809_1025
4664.3
P10809_1044
10832.6
P10809_1063
4421.6
P10809_1092
4229.9
P10809_1105
4694.4
Naive B-cell nTPM: 4893.0
Samples: 6
Max nTPM: 8468.9
Min nTPM: 3661.6
P10809_1011
3661.6
P10809_1029
4613.2
P10809_1048
8468.9
P10809_1067
4305.7
P10809_1091
4017.4
P10809_1104
4291.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
671.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 671.2
Samples: 4
Max nTPM: 1130.3
Min nTPM: 148.1
RHH5310_R3677
680.7
RHH5218_R3590
148.1
RHH5247_R3619
1130.3
RHH5276_R3648
725.6
Naive B-cell nTPM: 588.1
Samples: 4
Max nTPM: 1030.5
Min nTPM: 214.8
RHH5308_R3675
631.5
RHH5216_R3588
214.8
RHH5245_R3617
1030.5
RHH5274_R3646
475.6
Non-switched memory B-cell nTPM: 438.5
Samples: 4
Max nTPM: 647.8
Min nTPM: 197.5
RHH5309_R3676
647.8
RHH5217_R3589
197.5
RHH5246_R3618
262.4
RHH5275_R3647
646.4
Plasmablast nTPM: 519.1
Samples: 4
Max nTPM: 724.5
Min nTPM: 261.5
RHH5312_R3679
724.5
RHH5220_R3592
261.5
RHH5249_R3621
506.0
RHH5278_R3650
584.3
Switched memory B-cell nTPM: 436.4
Samples: 4
Max nTPM: 678.3
Min nTPM: 244.2
RHH5311_R3678
678.3
RHH5219_R3591
291.5
RHH5248_R3620
244.2
RHH5277_R3649
531.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
207.6
Schmiedel sample id
TPM
Naive B-cell TPM: 207.6
Samples: 91
Max TPM: 373.2
Min TPM: 18.6
B_CELL_NAIVE_1
373.2
B_CELL_NAIVE_2
363.6
B_CELL_NAIVE_3
361.5
B_CELL_NAIVE_4
352.4
B_CELL_NAIVE_5
343.9
B_CELL_NAIVE_6
342.9
B_CELL_NAIVE_7
341.6
B_CELL_NAIVE_8
334.2
B_CELL_NAIVE_9
333.9
B_CELL_NAIVE_10
329.7
B_CELL_NAIVE_11
328.5
B_CELL_NAIVE_12
323.2
B_CELL_NAIVE_13
320.6
B_CELL_NAIVE_14
320.2
B_CELL_NAIVE_15
312.3
B_CELL_NAIVE_16
307.4
B_CELL_NAIVE_17
303.8
B_CELL_NAIVE_18
301.5
B_CELL_NAIVE_19
300.2
B_CELL_NAIVE_20
296.2
B_CELL_NAIVE_21
292.2
B_CELL_NAIVE_22
289.6
B_CELL_NAIVE_23
289.0
B_CELL_NAIVE_24
288.0
B_CELL_NAIVE_25
279.8
B_CELL_NAIVE_26
274.7
B_CELL_NAIVE_27
266.8
B_CELL_NAIVE_28
264.7
B_CELL_NAIVE_29
252.7
B_CELL_NAIVE_30
251.2
B_CELL_NAIVE_31
250.4
B_CELL_NAIVE_32
249.1
B_CELL_NAIVE_33
246.0
B_CELL_NAIVE_34
243.1
B_CELL_NAIVE_35
242.9
B_CELL_NAIVE_36
241.3
B_CELL_NAIVE_37
238.7
B_CELL_NAIVE_38
236.5
B_CELL_NAIVE_39
235.5
B_CELL_NAIVE_40
234.0
B_CELL_NAIVE_41
233.6
B_CELL_NAIVE_42
229.2
B_CELL_NAIVE_43
228.8
B_CELL_NAIVE_44
226.0
B_CELL_NAIVE_45
223.5
B_CELL_NAIVE_46
218.7
B_CELL_NAIVE_47
217.7
B_CELL_NAIVE_48
209.5
B_CELL_NAIVE_49
208.6
B_CELL_NAIVE_50
203.3
B_CELL_NAIVE_51
199.0
B_CELL_NAIVE_52
198.0
B_CELL_NAIVE_53
196.0
B_CELL_NAIVE_54
195.9
B_CELL_NAIVE_55
193.4
B_CELL_NAIVE_56
188.7
B_CELL_NAIVE_57
183.0
B_CELL_NAIVE_58
181.5
B_CELL_NAIVE_59
175.3
B_CELL_NAIVE_60
175.2
B_CELL_NAIVE_61
165.9
B_CELL_NAIVE_62
159.5
B_CELL_NAIVE_63
156.0
B_CELL_NAIVE_64
154.8
B_CELL_NAIVE_65
153.6
B_CELL_NAIVE_66
148.7
B_CELL_NAIVE_67
147.1
B_CELL_NAIVE_68
138.4
B_CELL_NAIVE_69
137.4
B_CELL_NAIVE_70
134.2
B_CELL_NAIVE_71
132.9
B_CELL_NAIVE_72
121.1
B_CELL_NAIVE_73
118.9
B_CELL_NAIVE_74
113.2
B_CELL_NAIVE_75
109.2
B_CELL_NAIVE_76
99.2
B_CELL_NAIVE_77
98.1
B_CELL_NAIVE_78
93.1
B_CELL_NAIVE_79
93.0
B_CELL_NAIVE_80
90.2
B_CELL_NAIVE_81
87.8
B_CELL_NAIVE_82
71.1
B_CELL_NAIVE_83
65.9
B_CELL_NAIVE_84
58.0
B_CELL_NAIVE_85
43.0
B_CELL_NAIVE_86
38.1
B_CELL_NAIVE_87
32.2
B_CELL_NAIVE_88
23.0
B_CELL_NAIVE_89
22.7
B_CELL_NAIVE_90
21.2
B_CELL_NAIVE_91
18.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.