A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2396.7
nTPM
Monaco:
389.3
nTPM
Schmiedel:
211.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2396.7
HPA sample
nTPM
Classical monocyte nTPM: 2396.7
Samples: 6
Max nTPM: 3529.5
Min nTPM: 1723.3
P10809_1003
3529.5
P10809_1020
1955.4
P10809_1039
2556.2
P10809_1058
1941.0
P10809_1080
1723.3
P10809_1107
2674.8
Intermediate monocyte nTPM: 2011.5
Samples: 6
Max nTPM: 2959.2
Min nTPM: 1427.7
P10809_1004
1737.4
P10809_1023
2289.6
P10809_1042
2001.4
P10809_1061
1427.7
P10809_1081
1653.5
P10809_1108
2959.2
Non-classical monocyte nTPM: 1601.6
Samples: 5
Max nTPM: 2345.3
Min nTPM: 1229.7
P10809_1005
1657.6
P10809_1053
1523.1
P10809_1072
1229.7
P10809_1082
1252.2
P10809_1109
2345.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
389.3
Monaco sample
nTPM
Classical monocyte nTPM: 233.6
Samples: 4
Max nTPM: 344.2
Min nTPM: 150.6
RHH5313_R3680
344.2
RHH5221_R3593
203.7
RHH5250_R3622
150.6
RHH5279_R3651
235.9
Intermediate monocyte nTPM: 389.3
Samples: 4
Max nTPM: 519.7
Min nTPM: 203.5
RHH5314_R3681
440.6
RHH5222_R3594
519.7
RHH5251_R3623
393.4
RHH5280_R3652
203.5
Non-classical monocyte nTPM: 273.4
Samples: 4
Max nTPM: 417.6
Min nTPM: 132.9
RHH5315_R3682
417.6
RHH5223_R3595
287.3
RHH5252_R3624
255.6
RHH5281_R3653
132.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
211.0
Schmiedel sample id
TPM
Classical monocyte TPM: 211.0
Samples: 91
Max TPM: 339.9
Min TPM: 86.5
MONOCYTES_1
339.9
MONOCYTES_2
328.7
MONOCYTES_3
325.3
MONOCYTES_4
322.0
MONOCYTES_5
300.5
MONOCYTES_6
295.9
MONOCYTES_7
294.0
MONOCYTES_8
293.3
MONOCYTES_9
290.0
MONOCYTES_10
284.7
MONOCYTES_11
283.3
MONOCYTES_12
281.9
MONOCYTES_13
276.3
MONOCYTES_14
275.2
MONOCYTES_15
272.2
MONOCYTES_16
269.3
MONOCYTES_17
266.6
MONOCYTES_18
266.4
MONOCYTES_19
265.7
MONOCYTES_20
265.6
MONOCYTES_21
265.2
MONOCYTES_22
261.8
MONOCYTES_23
259.8
MONOCYTES_24
259.0
MONOCYTES_25
258.6
MONOCYTES_26
258.2
MONOCYTES_27
257.5
MONOCYTES_28
254.4
MONOCYTES_29
248.2
MONOCYTES_30
244.1
MONOCYTES_31
240.8
MONOCYTES_32
240.3
MONOCYTES_33
238.2
MONOCYTES_34
237.5
MONOCYTES_35
236.9
MONOCYTES_36
231.9
MONOCYTES_37
231.7
MONOCYTES_38
230.5
MONOCYTES_39
230.2
MONOCYTES_40
229.1
MONOCYTES_41
225.1
MONOCYTES_42
222.5
MONOCYTES_43
221.8
MONOCYTES_44
220.9
MONOCYTES_45
220.2
MONOCYTES_46
216.0
MONOCYTES_47
214.8
MONOCYTES_48
213.9
MONOCYTES_49
211.9
MONOCYTES_50
210.0
MONOCYTES_51
209.3
MONOCYTES_52
206.7
MONOCYTES_53
190.4
MONOCYTES_54
190.3
MONOCYTES_55
189.4
MONOCYTES_56
187.0
MONOCYTES_57
184.9
MONOCYTES_58
184.9
MONOCYTES_59
183.5
MONOCYTES_60
180.7
MONOCYTES_61
180.3
MONOCYTES_62
179.6
MONOCYTES_63
178.5
MONOCYTES_64
175.6
MONOCYTES_65
172.2
MONOCYTES_66
170.6
MONOCYTES_67
168.3
MONOCYTES_68
165.3
MONOCYTES_69
162.4
MONOCYTES_70
162.3
MONOCYTES_71
161.6
MONOCYTES_72
160.8
MONOCYTES_73
157.4
MONOCYTES_74
157.4
MONOCYTES_75
153.2
MONOCYTES_76
152.1
MONOCYTES_77
149.7
MONOCYTES_78
136.9
MONOCYTES_79
135.3
MONOCYTES_80
129.0
MONOCYTES_81
124.2
MONOCYTES_82
123.4
MONOCYTES_83
123.1
MONOCYTES_84
116.7
MONOCYTES_85
113.3
MONOCYTES_86
110.4
MONOCYTES_87
102.2
MONOCYTES_88
101.0
MONOCYTES_89
96.8
MONOCYTES_90
96.3
MONOCYTES_91
86.5
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Non-classical monocyte TPM: 118.5
Samples: 90
Max TPM: 226.9
Min TPM: 17.7
M2_1
226.9
M2_2
221.4
M2_3
213.6
M2_4
203.5
M2_5
199.1
M2_6
197.7
M2_7
196.3
M2_8
194.6
M2_9
191.9
M2_10
189.7
M2_11
183.2
M2_12
177.0
M2_13
175.7
M2_14
171.5
M2_15
169.4
M2_16
167.4
M2_17
162.9
M2_18
162.0
M2_19
158.8
M2_20
158.6
M2_21
155.1
M2_22
154.4
M2_23
154.3
M2_24
153.6
M2_25
153.0
M2_26
152.9
M2_27
147.0
M2_28
145.9
M2_29
145.1
M2_30
145.0
M2_31
143.6
M2_32
138.6
M2_33
138.1
M2_34
137.2
M2_35
136.7
M2_36
134.5
M2_37
130.9
M2_38
130.4
M2_39
130.3
M2_40
129.1
M2_41
128.0
M2_42
127.7
M2_43
126.1
M2_44
124.6
M2_45
124.2
M2_46
123.0
M2_47
122.4
M2_48
120.9
M2_49
116.9
M2_50
116.7
M2_51
112.0
M2_52
110.4
M2_53
108.1
M2_54
107.7
M2_55
107.1
M2_56
100.8
M2_57
100.5
M2_58
100.0
M2_59
100.0
M2_60
97.8
M2_61
95.3
M2_62
93.6
M2_63
93.3
M2_64
92.4
M2_65
90.5
M2_66
78.6
M2_67
78.4
M2_68
77.2
M2_69
75.5
M2_70
75.1
M2_71
73.4
M2_72
73.2
M2_73
69.7
M2_74
67.0
M2_75
66.8
M2_76
66.4
M2_77
55.6
M2_78
54.6
M2_79
53.4
M2_80
49.7
M2_81
49.7
M2_82
43.3
M2_83
41.1
M2_84
40.3
M2_85
36.8
M2_86
29.6
M2_87
28.0
M2_88
23.0
M2_89
20.4
M2_90
17.7
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