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  • NDUFS7
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:159.8 nTPM
HPA Brain:110.5 nTPM
GTEx:159.8 nTPM
FANTOM5:56.0 Scaled Tags Per Million
Pig:60.1 nTPM
Mouse:158.8 nTPM
Allen mouse:13.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.5
Sample id Sample description nTPM
Amygdala
nTPM: 110.5
2814 Male, age 76, right hemisphere 144.5
2514 Male, age 75, right hemisphere 120.7
1987 Female, age 91, left hemisphere 99.1
2695 Female, age 67, right hemisphere 98.7
2517 Female, age 94, left hemisphere 89.4
Basal amygdala
nTPM: 81.7
2609 Male, age 75, right hemisphere 99.5
1955 Male, age 76, both hemispheres 94.1
2110 Male, age 80, left hemisphere 90.0
2243 Female, age 91, right hemisphere 76.3
2685 Female, age 94, left hemisphere 72.1
2827 Female, age 67, right hemisphere 58.3
Central amygdala
nTPM: 101.0
1905 Male, age 76, both hemispheres 149.7
2826 Female, age 94, left hemisphere 116.4
2515 Male, age 75, right hemisphere 96.5
2239 Male, age 80, left hemisphere 86.2
2701 Female, age 91, right hemisphere 56.3
Corticomedial amygdala
nTPM: 68.6
2428 Male, age 75, right hemisphere 86.4
2829 Male, age 80, left hemisphere 82.8
2240 Male, age 76, both hemispheres 70.4
2429 Female, age 94, left hemisphere 68.2
2242 Female, age 91, right hemisphere 59.5
2535 Female, age 67, right hemisphere 44.4
Lateral amygdala
nTPM: 93.3
2516 Male, age 75, right hemisphere 115.5
1883 Male, age 76, both hemispheres 114.3
2534 Female, age 94, left hemisphere 112.5
2830 Female, age 67, right hemisphere 78.1
2256 Male, age 80, left hemisphere 70.5
2255 Female, age 91, right hemisphere 69.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 159.8
Samples: 181

Max nTPM: 388.2
Min nTPM: 56.8
Std nTPM: 44.9
Median nTPM: 156.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 388.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 357.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 341.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 323.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 283.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 272.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 234.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 233.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 226.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 226.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 220.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 219.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 215.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 213.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 211.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 210.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 205.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 204.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 204.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 202.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 200.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 199.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 195.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 195.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 193.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 193.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 192.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 192.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 191.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 191.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 188.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 188.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 187.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 186.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 184.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 184.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 183.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 183.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 183.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 182.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 181.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 177.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 177.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 175.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 175.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 175.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 175.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 174.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 174.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 173.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 171.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 171.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 170.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 170.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 170.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 169.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 168.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 168.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 167.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 167.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 166.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 166.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 165.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 165.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 164.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 164.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 164.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 164.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 164.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 163.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 163.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 163.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 163.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 162.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 162.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 162.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 162.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 162.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 161.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 161.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 160.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 159.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 158.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 158.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 158.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 158.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 158.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 158.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 157.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 157.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 156.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 156.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 156.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 155.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 155.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 155.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 154.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 153.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 152.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 152.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 152.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 152.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 151.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 151.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 151.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 150.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 150.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 149.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 148.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 148.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 146.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 146.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 146.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 146.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 146.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 144.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 143.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 143.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 143.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 141.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 141.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 140.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 140.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 139.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 138.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 137.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 137.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 135.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 135.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 134.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 134.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 133.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 132.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 132.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 132.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 132.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 132.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 132.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 132.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 132.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 131.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 131.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 131.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 130.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 129.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 128.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 127.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 127.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 127.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 126.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 125.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 124.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 123.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 122.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 121.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 120.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 118.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 117.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 116.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 115.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 111.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 111.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 111.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 109.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 107.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 106.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 106.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 106.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 105.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 104.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 103.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 101.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 93.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 92.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 91.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 89.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 87.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 86.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 56.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 56.0
FF:10151-102I7 76 years, female 56.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.1
Pig sample Sample description nTPM
Amygdala
nTPM: 60.2
Samples: 4

Max nTPM: 84.2
Min nTPM: 50.2
Sample A Female 84.2
Sample B Female 55.0
Sample C Male 50.2
Sample D Male 51.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 158.8
Samples: 4

Max nTPM: 181.0
Min nTPM: 137.5
Sample A Male 160.4
Sample B Male 156.4
Sample C Female 181.0
Sample D Female 137.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.9
70526029 Antisense, RP_050317_04_H04, Mouse strain C57BL/6J (56 days, male) 13.9

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