MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:200.2 nTPM
HPA Brain:123.8 nTPM
GTEx:200.2 nTPM
FANTOM5:117.6 Scaled Tags Per Million
Pig:116.3 nTPM
Mouse:79.2 nTPM
Allen mouse:12.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 123.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.4
2411 Female, age 72, unknown 144.5
2019 Male, age 18, unknown 118.5
1870 Female, age 42, unknown 108.6
1827 Male, age 72, unknown 108.3
2828 Female, age 72, unknown 107.5
1833 Male, age 53, unknown 105.8
1830 Male, age 51, unknown 100.6
2219 Male, age 76, both hemispheres 96.5
2586 Male, age 75, left hemisphere 92.6
2666 Male, age 74, left hemisphere 71.6
Dorsal raphe nucleus
nTPM: 113.5
2298 Female, age 72, unknown 147.1
2750 Male, age 76, both hemispheres 130.6
1828 Male, age 53, unknown 103.3
2047 Male, age 72, unknown 96.6
2016 Female, age 72, unknown 89.7
Inferior colliculus
nTPM: 97.6
2097 Female, age 72, unknown 124.0
1890 Male, age 53, unknown 95.1
1848 Female, age 42, unknown 94.7
2849 Male, age 72, unknown 76.6
Median raphe nucleus
nTPM: 103.8
2220 Male, age 76, midline 103.8
Periaquaductal grey, anterior
nTPM: 116.6
1795 Male, age 51, unknown 120.1
1947 Male, age 18, unknown 117.7
2502 Female, age 75, unknown 111.9
Periaquaductal grey, dorsal
nTPM: 76.9
2464 Female, age 72, unknown 88.4
1831 Male, age 72, unknown 76.0
1840 Male, age 53, unknown 74.9
2850 Male, age 76, both hemispheres 68.1
Periaquaductal grey, lateral
nTPM: 89.8
2272 Male, age 74, both hemispheres 110.4
2053 Male, age 18, unknown 84.8
2140 Male, age 76, both hemispheres 74.4
Pretectal area
nTPM: 109.9
2007 Male, age 72, unknown 140.1
2667 Female, age 75, unknown 129.9
1817 Female, age 42, unknown 127.6
2224 Female, age 72, unknown 120.9
1944 Female, age 72, unknown 112.8
2273 Male, age 74, both hemispheres 112.6
1816 Male, age 51, unknown 112.3
1815 Male, age 53, unknown 109.1
2316 Male, age 76, right hemisphere 100.4
2825 Male, age 18, unknown 88.1
2407 Male, age 75, both hemispheres 55.6
Red nucleus
nTPM: 123.8
2503 Female, age 72, unknown 152.6
1821 Female, age 72, unknown 139.2
1904 Male, age 53, unknown 136.1
2227 Male, age 72, unknown 135.8
2785 Male, age 18, unknown 132.3
2769 Male, age 72, unknown 130.5
2725 Female, age 75, unknown 123.3
1865 Male, age 51, unknown 115.5
1954 Female, age 42, unknown 114.9
2823 Male, age 76, right hemisphere 114.3
2588 Male, age 74, left hemisphere 109.5
2584 Male, age 75, left hemisphere 81.3
Substantia nigra
nTPM: 103.4
1916 Female, age 42, unknown 142.7
1889 Female, age 72, unknown 129.0
1851 Male, age 51, unknown 123.5
1941 Male, age 53, unknown 113.3
2583 Male, age 75, right hemisphere 99.6
2590 Female, age 75, unknown 95.7
2699 Male, age 18, unknown 93.1
2241 Male, age 72, unknown 86.3
2665 Male, age 74, both hemispheres 80.0
2409 Female, age 72, unknown 70.9
Superior colliculus
nTPM: 103.0
1913 Female, age 42, unknown 124.1
1796 Male, age 53, unknown 119.3
2261 Male, age 18, unknown 112.9
2087 Female, age 72, unknown 111.5
1995 Male, age 72, unknown 107.7
2587 Male, age 74, left hemisphere 106.3
1895 Male, age 76, right hemisphere 95.9
1839 Male, age 51, unknown 94.9
2668 Female, age 75, unknown 91.7
2664 Male, age 75, both hemispheres 66.1
Ventral tegmental area
nTPM: 114.9
2410 Female, age 72, unknown 151.3
2218 Male, age 76, both hemispheres 133.0
1915 Female, age 42, unknown 119.4
2223 Female, age 72, unknown 102.4
1942 Male, age 51, unknown 100.4
2021 Male, age 53, unknown 82.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 200.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 200.2
Samples: 183

Max nTPM: 512.8
Min nTPM: 77.2
Std nTPM: 57.3
Median nTPM: 190.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 512.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 410.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 406.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 360.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 359.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 335.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 335.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 331.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 310.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 303.8
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 303.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.6
FF:10158-103A5 76 years, female 117.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 116.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.2
Samples: 4

Max nTPM: 124.2
Min nTPM: 72.0
Sample A Female 124.2
Sample B Female 72.0
Sample C Male 88.5
Sample D Male 72.2
Midbrain
nTPM: 104.5
Samples: 4

Max nTPM: 121.4
Min nTPM: 85.9
Sample A Female 121.4
Sample B Female 85.9
Sample C Male 117.7
Sample D Male 92.8
Periaqueductal gray
nTPM: 72.5
Samples: 3

Max nTPM: 78.5
Min nTPM: 62.0
Sample B Female 76.9
Sample C Male 78.5
Sample D Male 62.0
Superior colliculi
nTPM: 116.4
Samples: 4

Max nTPM: 143.0
Min nTPM: 87.8
Sample A Female 143.0
Sample B Female 87.8
Sample C Male 140.6
Sample D Male 94.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 79.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.2
Samples: 4

Max nTPM: 114.2
Min nTPM: 56.4
Sample A Male 114.2
Sample B Male 69.5
Sample C Female 56.4
Sample D Female 76.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
70526029 Antisense, RP_050317_04_H04, Mouse strain C57BL/6J (56 days, male) 12.9

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